(no subject)

I have a hard time to make GBrowse to display a new set of gff3/fa data
set (search of any keyword gave "not found").  So I tried to load a set
of gff3 and fasta file into a new gbrowse database, and tried to take a
look what are loaded into the MySQL tables, in two ways:

> bp_bulk_load_gff.pl -d gb_bt --create Chr1.gff3 Chr1.fa

-- result in following mysql tables:

fattribute ( 3848 records )
fattribute_to_feature ( 8077 records )
fdata ( 16883 records )
fdna ( 78796 records )
fgroup ( 2723 records )
fmeta ( 4 records )
ftype ( 4 records )


> bp_seqfeature_load.pl -d gb_bt -c -f Chr1.gff3 Chr1.fa

-- result in following mysql tables (note different from above):

attribute ( 2218 records )
attributelist ( 5 records )
feature ( 16883 records )
locationlist ( 1 records )
meta ( 4 records )
name ( 893 records )
parent2child ( 15990 records )
sequence ( 78796 records )
typelist ( 4 records )

I wonder why? Should they both work? .. I see there are a number of
gbrowse data load tools (bp_load_gff.pl, bp_bulk_load_gff.pl,
bp_seqfeature_load.pl, bp_fast_load_gff.pl) in various GBrowse
documentations but am kind confused to clearly distinguish them (they have
good man pages though).  Is there a web page listing their differences
and/or best fit situations?

Thank you,
Zhiliang

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