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by Vinay M-2 :: Rate this Message:

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Hi everyone,

Could you please help me to use obgrep to eliminate amines. I am unable to use obgrep since its not recognizing the parenthesis, for example I Primary alpha amine

[NX3H2+0,NX4H3+;$([N]{!C])] Obgrep doesn't work for this pattern.

Could someone help me with this.

Thanks a lot

With Warm Regards

Vinay

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by baoilleach :: Rate this Message:

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Hello Vinay,

In your pattern you have a "{" - is this an error? For some useful functional groups SMARTS strings, please see the file SMARTS_InteLigand.txt in the openbabel distribution, or online at http://openbabel.svn.sourceforge.net/viewvc/openbabel/openbabel/trunk/data/SMARTS_InteLigand.txt?view=markup

Regards,
Noel

2009/10/26 Vinay M <vin03@...>

Hi everyone,
Could you please help me to use obgrep to eliminate amines. I am unable to use obgrep since its not recognizing the parenthesis, for example I Primary alpha amine
[NX3H2+0,NX4H3+;$([N]{!C])] Obgrep doesn't work for this pattern.

Could someone help me with this.
Thanks a lot

With Warm Regards
Vinay

Looking for the perfect gift? Give the gift of Flickr!
------------------------------------------------------------------------------
Come build with us! The BlackBerry(R) Developer Conference in SF, CA
is the only developer event you need to attend this year. Jumpstart your
developing skills, take BlackBerry mobile applications to market and stay
ahead of the curve. Join us from November 9 - 12, 2009. Register now!
http://p.sf.net/sfu/devconference
_______________________________________________
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https://lists.sourceforge.net/lists/listinfo/openbabel-discuss

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is the only developer event you need to attend this year. Jumpstart your
developing skills, take BlackBerry mobile applications to market and stay
ahead of the curve. Join us from November 9 - 12, 2009. Register now!
http://p.sf.net/sfu/devconference
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