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BGL - parallel/distributed
by oslu
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Does anybody know how to use the functions in graph/parallel and
graph/distributed? I couldn't find any references in documentation to parallel/distributed processing in graph lib, though there is obviously such functionality. Is it the same implementation as in Parallel BGL project (http://www.osl.iu.edu/research/pbgl/)? I must say that the documentation of graph library desperately needs an update. _______________________________________________ Boost-users mailing list Boost-users@... http://lists.boost.org/mailman/listinfo.cgi/boost-users |
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Re: BGL - parallel/distributed
by malat
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For boost 1.40 you can find it here:
http://www.boost.org/doc/libs/1_40_0/libs/graph_parallel/doc/html/index.html I am not sure what are the differences with 1.41. On Fri, Nov 6, 2009 at 2:17 PM, Ondrej Sluciak <ondrej.sluciak@...> wrote: > Does anybody know how to use the functions in graph/parallel and > graph/distributed? I couldn't find any references in documentation to > parallel/distributed processing in graph lib, though there is obviously such > functionality. Is it the same implementation as in Parallel BGL project > (http://www.osl.iu.edu/research/pbgl/)? I must say that the documentation of > graph library desperately needs an update. > _______________________________________________ > Boost-users mailing list > Boost-users@... > http://lists.boost.org/mailman/listinfo.cgi/boost-users > -- Mathieu _______________________________________________ Boost-users mailing list Boost-users@... http://lists.boost.org/mailman/listinfo.cgi/boost-users |
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Re: BGL - parallel/distributed
by oslu
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Wow, is there a link on the web site to this subpage which I didn't see?
Thank you. Mathieu Malaterre wrote: > For boost 1.40 you can find it here: > > http://www.boost.org/doc/libs/1_40_0/libs/graph_parallel/doc/html/index.html > > I am not sure what are the differences with 1.41. > > On Fri, Nov 6, 2009 at 2:17 PM, Ondrej Sluciak > <ondrej.sluciak@...> wrote: > >> Does anybody know how to use the functions in graph/parallel and >> graph/distributed? I couldn't find any references in documentation to >> parallel/distributed processing in graph lib, though there is obviously such >> functionality. Is it the same implementation as in Parallel BGL project >> (http://www.osl.iu.edu/research/pbgl/)? I must say that the documentation of >> graph library desperately needs an update. >> _______________________________________________ >> Boost-users mailing list >> Boost-users@... >> http://lists.boost.org/mailman/listinfo.cgi/boost-users >> >> Boost-users mailing list Boost-users@... http://lists.boost.org/mailman/listinfo.cgi/boost-users |
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Re: BGL - parallel/distributed
by oslu
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Ok, I tried the simplest possible example, but just didn't figure out
where the problem is. I am on windows, mpich2 installed, all boost libs correctly compiled with mpi, but if I do something like #include <boost/graph/use_mpi.hpp> #include <boost/graph/distributed/selector.hpp> #include <boost/graph/distributed/adjacency_list.hpp> #include <boost/graph/distributed/mpi_process_group.hpp> void main(){ using namespace boost; typedef adjacency_list<vecS,distributedS<graph::distributed::mpi_process_group, vecS>, directedS> Graph; Graph g(4); }; I always get linking problems like: Error 7 error LNK2019: unresolved external symbol "void __cdecl boost::graph::distributed::synchronize(class boost::graph::distributed::mpi_process_group const &)" (?synchronize@distributed@graph@boost@@YAXABVmpi_process_group@123@@Z) referenced in function "public: __thiscall boost::adjacency_list<struct boost::vecS,struct boost::distributedS<class boost::graph::distributed::mpi_process_group,struct boost::vecS,struct boost::defaultS>,struct boost::directedS,struct boost::no_property,struct boost::no_property,struct boost::no_property,struct boost::listS>::~adjacency_list<struct boost::vecS,struct boost::distributedS<class boost::graph::distributed::mpi_process_group,struct boost::vecS,struct boost::defaultS>,struct boost::directedS,struct boost::no_property,struct boost::no_property,struct boost::no_property,struct boost::listS>(void)" (??1?$adjacency_list@UvecS@boost@@U?$distributedS@Vmpi_process_group@distributed@graph@boost@@UvecS@4@UdefaultS@4@@2@UdirectedS@2@Uno_property@2@U52@U52@UlistS@2@@boost@@QAE@XZ) boostTest2.obj I think I have included all the necessary libs (including mpi.lib from mpich directory), so I still don't understand where is the problem. Does anyone tried distributed graph class? Mathieu Malaterre wrote: > For boost 1.40 you can find it here: > > http://www.boost.org/doc/libs/1_40_0/libs/graph_parallel/doc/html/index.html > > I am not sure what are the differences with 1.41. > > On Fri, Nov 6, 2009 at 2:17 PM, Ondrej Sluciak > <ondrej.sluciak@...> wrote: > >> Does anybody know how to use the functions in graph/parallel and >> graph/distributed? I couldn't find any references in documentation to >> parallel/distributed processing in graph lib, though there is obviously such >> functionality. Is it the same implementation as in Parallel BGL project >> (http://www.osl.iu.edu/research/pbgl/)? I must say that the documentation of >> graph library desperately needs an update. >> _______________________________________________ >> Boost-users mailing list >> Boost-users@... >> http://lists.boost.org/mailman/listinfo.cgi/boost-users >> >> > > > > -- Dipl.-Ing. Ondrej Sluciak Room CG-04-06 Vienna University of Technology, Austria Institute of Communications and Radio-Frequency Engineering Gusshausstrasse 25-29/389 http://www.nt.tuwien.ac.at _______________________________________________ Boost-users mailing list Boost-users@... http://lists.boost.org/mailman/listinfo.cgi/boost-users |
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Re: BGL - parallel/distributed
by Jeremiah Willcock
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On Mon, 9 Nov 2009, Ondrej Sluciak wrote:
> Ok, I tried the simplest possible example, but just didn't figure out where > the problem is. I am on windows, mpich2 installed, all boost libs correctly > compiled with mpi, but if I do something like > > #include <boost/graph/use_mpi.hpp> > #include <boost/graph/distributed/selector.hpp> > #include <boost/graph/distributed/adjacency_list.hpp> > #include <boost/graph/distributed/mpi_process_group.hpp> > > void main(){ > using namespace boost; > typedef > adjacency_list<vecS,distributedS<graph::distributed::mpi_process_group, > vecS>, directedS> Graph; > > Graph g(4); > > }; > > I always get linking problems like: > Error 7 error LNK2019: unresolved external symbol "void __cdecl > boost::graph::distributed::synchronize(class > boost::graph::distributed::mpi_process_group const &)" > (?synchronize@distributed@graph@boost@@YAXABVmpi_process_group@123@@Z) > referenced in function "public: __thiscall boost::adjacency_list<struct > boost::vecS,struct boost::distributedS<class > boost::graph::distributed::mpi_process_group,struct boost::vecS,struct > boost::defaultS>,struct boost::directedS,struct boost::no_property,struct > boost::no_property,struct boost::no_property,struct > boost::listS>::~adjacency_list<struct boost::vecS,struct > boost::distributedS<class boost::graph::distributed::mpi_process_group,struct > boost::vecS,struct boost::defaultS>,struct boost::directedS,struct > boost::no_property,struct boost::no_property,struct boost::no_property,struct > boost::listS>(void)" > (??1?$adjacency_list@UvecS@boost@@U?$distributedS@Vmpi_process_group@distributed@graph@boost@@UvecS@4@UdefaultS@4@@2@UdirectedS@2@Uno_property@2@U52@U52@UlistS@2@@boost@@QAE@XZ) > boostTest2.obj > > I think I have included all the necessary libs (including mpi.lib from mpich > directory), so I still don't understand where is the problem. Does anyone > tried distributed graph class? Are you also including the graph_parallel library? Boost.Graph.Parallel is not header-only, unlike almost all of the sequential Boost.Graph library. -- Jeremiah Willcock _______________________________________________ Boost-users mailing list Boost-users@... http://lists.boost.org/mailman/listinfo.cgi/boost-users |
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Re: BGL - parallel/distributed
by oslu
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You are right, that was what I was missing. Thank you. Anyway, no I can
compile it and run it, but the program always exits at the line Graph g(4) with exit code 0x1. It quits in the inizialization of mpi_process_group::impl::impl(std::size_t num_headers, std::size_t buffer_sz, communicator_type parent_comm) : comm(parent_comm, boost::mpi::comm_duplicate), oob_reply_comm(parent_comm, boost::mpi::comm_duplicate), allocated_tags(boost::mpi::environment::max_tag()) exactly in libs/mpi/src/communicator.cpp communicator::communicator(const ...) on the line BOOST_MPI_CHECK_RESULT(MPI_Comm_dup, (comm, &newcomm)); It doesn't crash or anything, just exits the code "normally" with exit code 1. Do you have any idea what is wrong? Jeremiah Willcock wrote: > On Mon, 9 Nov 2009, Ondrej Sluciak wrote: > >> Ok, I tried the simplest possible example, but just didn't figure out >> where the problem is. I am on windows, mpich2 installed, all boost >> libs correctly compiled with mpi, but if I do something like >> >> #include <boost/graph/use_mpi.hpp> >> #include <boost/graph/distributed/selector.hpp> >> #include <boost/graph/distributed/adjacency_list.hpp> >> #include <boost/graph/distributed/mpi_process_group.hpp> >> >> void main(){ >> using namespace boost; >> typedef >> adjacency_list<vecS,distributedS<graph::distributed::mpi_process_group, >> vecS>, directedS> Graph; >> >> Graph g(4); >> >> }; >> >> I always get linking problems like: >> Error 7 error LNK2019: unresolved external symbol "void __cdecl >> boost::graph::distributed::synchronize(class >> boost::graph::distributed::mpi_process_group const &)" >> (?synchronize@distributed@graph@boost@@YAXABVmpi_process_group@123@@Z) >> referenced in function "public: __thiscall >> boost::adjacency_list<struct boost::vecS,struct >> boost::distributedS<class >> boost::graph::distributed::mpi_process_group,struct >> boost::vecS,struct boost::defaultS>,struct boost::directedS,struct >> boost::no_property,struct boost::no_property,struct >> boost::no_property,struct boost::listS>::~adjacency_list<struct >> boost::vecS,struct boost::distributedS<class >> boost::graph::distributed::mpi_process_group,struct >> boost::vecS,struct boost::defaultS>,struct boost::directedS,struct >> boost::no_property,struct boost::no_property,struct >> boost::no_property,struct boost::listS>(void)" >> (??1?$adjacency_list@UvecS@boost@@U?$distributedS@Vmpi_process_group@distributed@graph@boost@@UvecS@4@UdefaultS@4@@2@UdirectedS@2@Uno_property@2@U52@U52@UlistS@2@@boost@@QAE@XZ) >> boostTest2.obj >> >> I think I have included all the necessary libs (including mpi.lib >> from mpich directory), so I still don't understand where is the >> problem. Does anyone tried distributed graph class? > > Are you also including the graph_parallel library? > Boost.Graph.Parallel is not header-only, unlike almost all of the > sequential Boost.Graph library. > > -- Jeremiah Willcock > _______________________________________________ > Boost-users mailing list > Boost-users@... > http://lists.boost.org/mailman/listinfo.cgi/boost-users > > -- Dipl.-Ing. Ondrej Sluciak Room CG-04-06 Vienna University of Technology, Austria Institute of Communications and Radio-Frequency Engineering Gusshausstrasse 25-29/389 http://www.nt.tuwien.ac.at _______________________________________________ Boost-users mailing list Boost-users@... http://lists.boost.org/mailman/listinfo.cgi/boost-users |
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Re: BGL - parallel/distributed
by oslu
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To be even more precise, it exits the code in function MPI_Comm_dup of
mpi library. On linux I guess you have to have the mpi running, but I don't know how it is on windows with mpich2. Jeremiah Willcock wrote: > On Mon, 9 Nov 2009, Ondrej Sluciak wrote: > >> Ok, I tried the simplest possible example, but just didn't figure out >> where the problem is. I am on windows, mpich2 installed, all boost >> libs correctly compiled with mpi, but if I do something like >> >> #include <boost/graph/use_mpi.hpp> >> #include <boost/graph/distributed/selector.hpp> >> #include <boost/graph/distributed/adjacency_list.hpp> >> #include <boost/graph/distributed/mpi_process_group.hpp> >> >> void main(){ >> using namespace boost; >> typedef >> adjacency_list<vecS,distributedS<graph::distributed::mpi_process_group, >> vecS>, directedS> Graph; >> >> Graph g(4); >> >> }; >> >> I always get linking problems like: >> Error 7 error LNK2019: unresolved external symbol "void __cdecl >> boost::graph::distributed::synchronize(class >> boost::graph::distributed::mpi_process_group const &)" >> (?synchronize@distributed@graph@boost@@YAXABVmpi_process_group@123@@Z) >> referenced in function "public: __thiscall >> boost::adjacency_list<struct boost::vecS,struct >> boost::distributedS<class >> boost::graph::distributed::mpi_process_group,struct >> boost::vecS,struct boost::defaultS>,struct boost::directedS,struct >> boost::no_property,struct boost::no_property,struct >> boost::no_property,struct boost::listS>::~adjacency_list<struct >> boost::vecS,struct boost::distributedS<class >> boost::graph::distributed::mpi_process_group,struct >> boost::vecS,struct boost::defaultS>,struct boost::directedS,struct >> boost::no_property,struct boost::no_property,struct >> boost::no_property,struct boost::listS>(void)" >> (??1?$adjacency_list@UvecS@boost@@U?$distributedS@Vmpi_process_group@distributed@graph@boost@@UvecS@4@UdefaultS@4@@2@UdirectedS@2@Uno_property@2@U52@U52@UlistS@2@@boost@@QAE@XZ) >> boostTest2.obj >> >> I think I have included all the necessary libs (including mpi.lib >> from mpich directory), so I still don't understand where is the >> problem. Does anyone tried distributed graph class? > > Are you also including the graph_parallel library? > Boost.Graph.Parallel is not header-only, unlike almost all of the > sequential Boost.Graph library. > > -- Jeremiah Willcock > _______________________________________________ > Boost-users mailing list > Boost-users@... > http://lists.boost.org/mailman/listinfo.cgi/boost-users > > -- Dipl.-Ing. Ondrej Sluciak Room CG-04-06 Vienna University of Technology, Austria Institute of Communications and Radio-Frequency Engineering Gusshausstrasse 25-29/389 http://www.nt.tuwien.ac.at _______________________________________________ Boost-users mailing list Boost-users@... http://lists.boost.org/mailman/listinfo.cgi/boost-users |
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Re: BGL - parallel/distributed
by Nick Edmonds
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> To be even more precise, it exits the code in function MPI_Comm_dup
> of mpi library. On linux I guess you have to have the mpi running, > but I don't know how it is on windows with mpich2. > You never initialized the Boost.MPI environment. See the tests, but you're looking for something like: mpi::environment env(argc, argv); This basically functions like MPI_Init() plus some Boost.MPI initialization. Comm_dup fails because the communicator you're trying to dup doesn't exist. -Nick _______________________________________________ Boost-users mailing list Boost-users@... http://lists.boost.org/mailman/listinfo.cgi/boost-users |
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Re: BGL - parallel/distributed
by oslu
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Thank you very much. I thought that the constructor of graph would also
take care about initializing the mpi (if it has distributedS selector). Some working example in the documentation of graph_parallel would help a lot for sure. Now it seems that everything works for me. Thank you once more. Nick Edmonds wrote: >> To be even more precise, it exits the code in function MPI_Comm_dup >> of mpi library. On linux I guess you have to have the mpi running, >> but I don't know how it is on windows with mpich2. >> > > You never initialized the Boost.MPI environment. See the tests, but > you're looking for something like: > > mpi::environment env(argc, argv); > > This basically functions like MPI_Init() plus some Boost.MPI > initialization. Comm_dup fails because the communicator you're trying > to dup doesn't exist. > > -Nick > > _______________________________________________ > Boost-users mailing list > Boost-users@... > http://lists.boost.org/mailman/listinfo.cgi/boost-users > > -- Dipl.-Ing. Ondrej Sluciak Room CG-04-06 Vienna University of Technology, Austria Institute of Communications and Radio-Frequency Engineering Gusshausstrasse 25-29/389 http://www.nt.tuwien.ac.at _______________________________________________ Boost-users mailing list Boost-users@... http://lists.boost.org/mailman/listinfo.cgi/boost-users |
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