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Bio Java installation inquiry

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	Bio Java installation inquiry by Andy Lu-2 :: Rate this Message: Reply to Author \| View Threaded \| Show Only this Message Hi, I am able to get JMol to run on Eclipse, but I am having a lot of trouble getting biojava to run, I am not sure how to set up all of the class path, etc. I am new to using Eclipse and biojava. Is there a specific step by step instruction online available? Any help would be greatly appreciated! _______________________________________________ Biojava-l mailing list - Biojava-l@... http://lists.open-bio.org/mailman/listinfo/biojava-l
	Re: Bio Java installation inquiry by Andreas Prlic-3 :: Rate this Message: Reply to Author \| View Threaded \| Show Only this Message Hi Andy, best thing is to download the jar files from http://biojava.org/wiki/BioJava:Download . Proably the easiest way to get started is to create a new project in eclipse and right click on the project-> Properties -> Java build path -> Libraries -> Add jars Then your project will know how where to find the dependencies and you can start writing your own code. Andreas On Sat, Nov 7, 2009 at 10:06 AM, Andy Lu <andylu0320@...> wrote: > Hi, I am able to get JMol to run on Eclipse, but I am having a lot of > trouble getting biojava to run, I am not sure how to set up all of the > class > path, etc. > I am new to using Eclipse and biojava. Is there a specific step by step > instruction online available? > > Any help would be greatly appreciated! > _______________________________________________ > Biojava-l mailing list - Biojava-l@... > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - Biojava-l@... http://lists.open-bio.org/mailman/listinfo/biojava-l
	Re: Bio Java installation inquiry by Andreas Prlic-3 :: Rate this Message: Reply to Author \| View Threaded \| Show Only this Message You don;t need to have Jmol in the classpath for running biojava, but if you do, you can use the jmol/biojava interface contained in the protein structure modules. In that case JmolApplet.jar would be sufficient, you don;t need to check out the Jmol source... Andreas On Sat, Nov 7, 2009 at 10:33 AM, Andy Lu <andylu0320@...> wrote: > O I see, but don't I also need to have all of the JMol java files set up > first, or the BioJava jar file contains everything I need? > > > On Sat, Nov 7, 2009 at 1:14 PM, Andreas Prlic <andreas@...> wrote: > >> Hi Andy, >> >> best thing is to download the jar files from >> http://biojava.org/wiki/BioJava:Download . >> >> Proably the easiest way to get started is to create a new project in >> eclipse and right click on the project-> Properties -> Java build path -> >> Libraries -> Add jars >> >> Then your project will know how where to find the dependencies and you >> can start writing your own code. >> >> Andreas >> >> >> On Sat, Nov 7, 2009 at 10:06 AM, Andy Lu <andylu0320@...> wrote: >> >>> Hi, I am able to get JMol to run on Eclipse, but I am having a lot of >>> trouble getting biojava to run, I am not sure how to set up all of the >>> class >>> path, etc. >>> I am new to using Eclipse and biojava. Is there a specific step by step >>> instruction online available? >>> >>> Any help would be greatly appreciated! >>> _______________________________________________ >>> Biojava-l mailing list - Biojava-l@... >>> http://lists.open-bio.org/mailman/listinfo/biojava-l >>> >> >> > > > -- > Andy Lu > _______________________________________________ Biojava-l mailing list - Biojava-l@... http://lists.open-bio.org/mailman/listinfo/biojava-l
	Re: Bio Java installation inquiry by Andy Law :: Rate this Message: Reply to Author \| View Threaded \| Show Only this Message Andreas, When will the mavenised version of biojava be officially released? Later, Andy ________________________________________ From: biojava-l-bounces@... [biojava-l-bounces@...] On Behalf Of Andreas Prlic [andreas@...] Sent: 07 November 2009 18:14 To: Andy Lu Cc: biojava-l@... Subject: Re: [Biojava-l] Bio Java installation inquiry Hi Andy, best thing is to download the jar files from http://biojava.org/wiki/BioJava:Download . Proably the easiest way to get started is to create a new project in eclipse and right click on the project-> Properties -> Java build path -> Libraries -> Add jars Then your project will know how where to find the dependencies and you can start writing your own code. Andreas On Sat, Nov 7, 2009 at 10:06 AM, Andy Lu <andylu0320@...> wrote: > Hi, I am able to get JMol to run on Eclipse, but I am having a lot of > trouble getting biojava to run, I am not sure how to set up all of the > class > path, etc. > I am new to using Eclipse and biojava. Is there a specific step by step > instruction online available? > > Any help would be greatly appreciated! > _______________________________________________ > Biojava-l mailing list - Biojava-l@... > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - Biojava-l@... http://lists.open-bio.org/mailman/listinfo/biojava-l _______________________________________________ Biojava-l mailing list - Biojava-l@... http://lists.open-bio.org/mailman/listinfo/biojava-l
	Re: Bio Java installation inquiry by Andreas Prlic-3 :: Rate this Message: Reply to Author \| View Threaded \| Show Only this Message Hi Andy, At the present the plan is to spend some more time working on the modules and then make a release (called 3.0) at some point shortly after the hackaton in Cambridge in January. Early adopters can already now use the modules via SVN. Andreas On Sat, Nov 7, 2009 at 12:21 PM, andy law (RI) <andy.law@...>wrote: > Andreas, > > When will the mavenised version of biojava be officially released? > > Later, > > Andy > ________________________________________ > From: biojava-l-bounces@... [ > biojava-l-bounces@...] On Behalf Of Andreas Prlic [ > andreas@...] > Sent: 07 November 2009 18:14 > To: Andy Lu > Cc: biojava-l@... > Subject: Re: [Biojava-l] Bio Java installation inquiry > > Hi Andy, > > best thing is to download the jar files from > http://biojava.org/wiki/BioJava:Download . > > Proably the easiest way to get started is to create a new project in > eclipse > and right click on the project-> Properties -> Java build path -> Libraries > -> Add jars > > Then your project will know how where to find the dependencies and you can > start writing your own code. > > Andreas > > > On Sat, Nov 7, 2009 at 10:06 AM, Andy Lu <andylu0320@...> wrote: > > > Hi, I am able to get JMol to run on Eclipse, but I am having a lot of > > trouble getting biojava to run, I am not sure how to set up all of the > > class > > path, etc. > > I am new to using Eclipse and biojava. Is there a specific step by step > > instruction online available? > > > > Any help would be greatly appreciated! > > _______________________________________________ > > Biojava-l mailing list - Biojava-l@... > > http://lists.open-bio.org/mailman/listinfo/biojava-l > > > _______________________________________________ > Biojava-l mailing list - Biojava-l@... > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - Biojava-l@... http://lists.open-bio.org/mailman/listinfo/biojava-l