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BioJava

This forum is an archive for the mailing list: biojava-l@lists.open-bio.org (mailing list options). Messages posted here will be sent to this mailing list.

BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It include objects for manipulating sequences, file parsers, DAS client and server suport, access to BioSQL and Ensembl databases, and powerful analysis and statistical routines including a dynamic programming toolkit.

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A question about NexusFile and NewickTreeString by huijieqiao@gmail.com

10

by Andreas Prlic-2

just a test ^_^ by huijieqiao@gmail.com

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by huijieqiao@gmail.com

Re: A Exception Has Occurred During Parsing. (Ilhami Visne) by Deepak sheoran

1

by Richard Holland-6

A Exception Has Occurred During Parsing. by Ilhami Visne

4

by mark.schreiber

Sequences as strings to RichSequence iterator by Oliver Stolpe

3

by Oliver Stolpe

Job vacancies by Richard Holland-6

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by Richard Holland-6

A software project suggestion by Martin Petr

5

by Richard Holland-6

Koen Bruynseels is out of the office. by koen.bruynseels

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by koen.bruynseels

How do I get set of protein interactors for a specific protein from my code by jitesh dundas

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by jitesh dundas

NCBI xml parser by Pierre-Yves-3

9

by jitesh dundas

DAS workshop 7th-9th April 2010 by Jonathan Warren-4

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by Mauricio Herrera Cua...

Hackathon in January by Richard Holland-6

3

by Andreas Prlic-3

Fwd: Java Error:- XML Parsing Error: XML or text declaration not at start of entity by Richard Holland-6

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by Richard Holland-6

Java Error:- XML Parsing Error: XML or text declaration not at start of entity by jitesh dundas

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by jitesh dundas

sequencing data analysis by rabee.a.aa

1

by Richard Holland-6

Algorithm to compare protein sequences by Mara Axiom

2

by Thasso Griebel

Newick parser by Tiago Antão

5

by Tiago Antão

JMol I/O by Andy Lu-2

1

by Andreas Prlic-3

How do I read a FASTA file containing protein sequences in lowercase? by Carl Mäsak

5

by Richard Holland-6

Newick/Nexus processing of non-binary trees by Tiago Antão

6

by Tiago Antão

SeqIOTools deprecated, looking for alternatives // RichSeq.IOTools by Oliver Stolpe

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by Richard Holland-6

Bio Java installation inquiry by Andy Lu-2

4

by Andreas Prlic-3

Check out my photos on Facebook by Hemant Katta-3

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by Hemant Katta-3

Rooted trees in nexus files by Tiago Antão

24

by Richard Holland-6

Newick Tree Visualization by Mara Axiom

3

by Tiago Antão

\biojava-1.7-all\biojava-1.7\demos\seqviewer\EmblViewer.java - Doesn't Work by Mara Axiom

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by Mara Axiom

Hackathon by Richard Holland-6

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by Richard Holland-6

BioJava and Maven by Mark Fortner-3

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by Mark Fortner-3

Structure alignment parameters questions by Shane Sturrock

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by Shane Sturrock

Graphical libraries by Pierre-Yves-3

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by Pierre-Yves-3

For BioJava List: Possible solution to Hibernate and slow Atom storage. by Paul B-4

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by anon_anon

please don't send attachments to the biojava-lists by Andreas Prlic-3

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by Andreas Prlic-3

Re: [Biojava-dev] what is the default parameters of by Andreas Prlic-2

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by Andreas Prlic-2

ParseException when using interleaved Nexus file by David Johnson-16

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by David Johnson-16

Fwd: [Wg-phyloinformatics] bioinform article "Biomanycores" by Mark Schreiber-2

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by Mark Schreiber-2

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