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Bioperl not available from bioperl.org/DIST through package manager???
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Bioperl not available from bioperl.org/DIST through package manager???
by JorisMeys
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Dear all,
I have to update my version of bioperl, but my package manager doesn't seem to find it. I have following repositories in my list : ActiveState Package Repository : http://ppm4.activestate.com/MSWin32-x86/5.10/1004/package.xml (11.456 packages) BioPerl-Release Candidates : http://bioperl.org/DIST/RC (3 packages) BioPerl-Regular Releases : http://bioperl.org/DIST (0 packages) --> how so, 0 packages??? CHecked the site, and the ppd file for BioPerl is there. Yet, somehow the package manager says it's not. Anybody a clue as to what is wrong here? Working with ActiveState Perl 5.10.0 Cheers Joris _______________________________________________ Bioperl-l mailing list Bioperl-l@... http://lists.open-bio.org/mailman/listinfo/bioperl-l |
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Re: Bioperl not available from bioperl.org/DIST throughpackage manager???
by Mark A. Jensen
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Joris-- I've had this happen occasionally- might try removing and adding the
repo again, or try an install BioPerl anyway, to get the cache to kick over- cheers ----- Original Message ----- From: "joris meys" <jorismeys@...> To: <bioperl-l@...> Sent: Saturday, October 17, 2009 9:47 AM Subject: [Bioperl-l] Bioperl not available from bioperl.org/DIST throughpackage manager??? > Dear all, > > I have to update my version of bioperl, but my package manager doesn't > seem to find it. I have following repositories in my list : > > ActiveState Package Repository : > http://ppm4.activestate.com/MSWin32-x86/5.10/1004/package.xml (11.456 > packages) > BioPerl-Release Candidates : http://bioperl.org/DIST/RC (3 packages) > BioPerl-Regular Releases : http://bioperl.org/DIST (0 packages) --> > how so, 0 packages??? > > CHecked the site, and the ppd file for BioPerl is there. Yet, somehow > the package manager says it's not. Anybody a clue as to what is wrong > here? > > Working with ActiveState Perl 5.10.0 > > Cheers > Joris > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@... > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > _______________________________________________ Bioperl-l mailing list Bioperl-l@... http://lists.open-bio.org/mailman/listinfo/bioperl-l |
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Re: Bioperl not available from bioperl.org/DIST through package manager???
by JorisMeys
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I found the problem. Refreshing, removing and readding the
repository, and even a complete reboot of the computer doesn't help. Yet, It works when specifying : BioPerl-Regular Releases : http://bioperl.org/DIST/package.xml as a repository. I think this should be adjusted on the installation page in the WIKI. http://bioperl.open-bio.org/wiki/Installing_Bioperl_on_Windows Cheers Joris On Sat, Oct 17, 2009 at 3:47 PM, joris meys <jorismeys@...> wrote: > Dear all, > > I have to update my version of bioperl, but my package manager doesn't > seem to find it. I have following repositories in my list : > > ActiveState Package Repository : > http://ppm4.activestate.com/MSWin32-x86/5.10/1004/package.xml (11.456 > packages) > BioPerl-Release Candidates : http://bioperl.org/DIST/RC (3 packages) > BioPerl-Regular Releases : http://bioperl.org/DIST (0 packages) --> > how so, 0 packages??? > > CHecked the site, and the ppd file for BioPerl is there. Yet, somehow > the package manager says it's not. Anybody a clue as to what is wrong > here? > > Working with ActiveState Perl 5.10.0 > > Cheers > Joris > _______________________________________________ Bioperl-l mailing list Bioperl-l@... http://lists.open-bio.org/mailman/listinfo/bioperl-l |
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Re: Bioperl not available from bioperl.org/DIST throughpackage manager???
by Mark A. Jensen
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Ach, it should just work. I'm not a ppm build guru--- Chris?
----- Original Message ----- From: "joris meys" <jorismeys@...> To: <bioperl-l@...> Cc: "Mark A. Jensen" <maj@...> Sent: Saturday, October 17, 2009 11:35 AM Subject: Re: [Bioperl-l] Bioperl not available from bioperl.org/DIST throughpackage manager??? I found the problem. Refreshing, removing and readding the repository, and even a complete reboot of the computer doesn't help. Yet, It works when specifying : BioPerl-Regular Releases : http://bioperl.org/DIST/package.xml as a repository. I think this should be adjusted on the installation page in the WIKI. http://bioperl.open-bio.org/wiki/Installing_Bioperl_on_Windows Cheers Joris On Sat, Oct 17, 2009 at 3:47 PM, joris meys <jorismeys@...> wrote: > Dear all, > > I have to update my version of bioperl, but my package manager doesn't > seem to find it. I have following repositories in my list : > > ActiveState Package Repository : > http://ppm4.activestate.com/MSWin32-x86/5.10/1004/package.xml (11.456 > packages) > BioPerl-Release Candidates : http://bioperl.org/DIST/RC (3 packages) > BioPerl-Regular Releases : http://bioperl.org/DIST (0 packages) --> > how so, 0 packages??? > > CHecked the site, and the ppd file for BioPerl is there. Yet, somehow > the package manager says it's not. Anybody a clue as to what is wrong > here? > > Working with ActiveState Perl 5.10.0 > > Cheers > Joris > _______________________________________________ Bioperl-l mailing list Bioperl-l@... http://lists.open-bio.org/mailman/listinfo/bioperl-l _______________________________________________ Bioperl-l mailing list Bioperl-l@... http://lists.open-bio.org/mailman/listinfo/bioperl-l |
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Re: Bioperl not available from bioperl.org/DIST through package manager???
by Chris Fields-5
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The package.xml should be found automatically (i.e. the repo path
shouldn't be explicit). Just curious, but are you running ActivePerl 5.10.0 or 5.10.1? On windows? chris On Oct 17, 2009, at 10:35 AM, joris meys wrote: > I found the problem. Refreshing, removing and readding the > repository, and even a complete reboot of the computer doesn't help. > Yet, It works when specifying : > > BioPerl-Regular Releases : http://bioperl.org/DIST/package.xml > as a repository. > > I think this should be adjusted on the installation page in the WIKI. > http://bioperl.open-bio.org/wiki/Installing_Bioperl_on_Windows > > Cheers > Joris > > On Sat, Oct 17, 2009 at 3:47 PM, joris meys <jorismeys@...> > wrote: >> Dear all, >> >> I have to update my version of bioperl, but my package manager >> doesn't >> seem to find it. I have following repositories in my list : >> >> ActiveState Package Repository : >> http://ppm4.activestate.com/MSWin32-x86/5.10/1004/package.xml (11.456 >> packages) >> BioPerl-Release Candidates : http://bioperl.org/DIST/RC (3 packages) >> BioPerl-Regular Releases : http://bioperl.org/DIST (0 packages) --> >> how so, 0 packages??? >> >> CHecked the site, and the ppd file for BioPerl is there. Yet, somehow >> the package manager says it's not. Anybody a clue as to what is wrong >> here? >> >> Working with ActiveState Perl 5.10.0 >> >> Cheers >> Joris >> > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l@... > http://lists.open-bio.org/mailman/listinfo/bioperl-l _______________________________________________ Bioperl-l mailing list Bioperl-l@... http://lists.open-bio.org/mailman/listinfo/bioperl-l |
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