Bootstrapping positions in alignment

[JorisMeys]

Dear all,

I'm using the packages AlignIO and AlignI to construct a bootstrapping
procedure on my alignments. There is a function slice() in AlignI I
can use, but I actually need just a number of positions, not a slice.
Is there any other way of accessing the object so I can just specify
one position?

Thx in advance
Joris
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[Mark A. Jensen]

Hi Joris -
You may find what you're looking for in this post:
http://lists.open-bio.org/pipermail/bioperl-l/2009-September/031292.html
cheers
MAJ
----- Original Message -----
From: "joris meys" <jorismeys@...>
To: <bioperl-l@...>
Sent: Friday, October 16, 2009 3:35 PM
Subject: [Bioperl-l] Bootstrapping positions in alignment

> Dear all,
>
> I'm using the packages AlignIO and AlignI to construct a bootstrapping
> procedure on my alignments. There is a function slice() in AlignI I
> can use, but I actually need just a number of positions, not a slice.
> Is there any other way of accessing the object so I can just specify
> one position?
>
> Thx in advance
> Joris
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l@...
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>
>

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