Bug 286087 fixed on trunk - issue with package names starting the java

[tware]

https://bugs.eclipse.org/bugs/show_bug.cgi?id=286087

prior to these changes we do not look at classes that start with "java" or
"javax".  Now we will avoid looking at classes that start with "java." or
javax."

Tested with user-supplied recreation and regression testing.  No new regression
test added.

Reviewed by James Sutherland
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