Bug#552101: ITP: beast-mcmc -- Bayesian MCMC analysis of molecular sequences

[Felix Feyertag]

Package: wnpp
Severity: wishlist
Owner: Felix Feyertag <felix.feyertag@...>


Source: beast-mcmc
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team
<debian-med-packaging@...>
DM-Upload-Allowed: yes
Uploaders: Felix Feyertag <felix.feyertag@...>
Build-Depends: debhelper (>= 7)
Standards-Version: 3.8.0
Vcs-Browser:
http://svn.debian.org/wsvn/debian-med/trunk/packages/beast-mcmc/trunk/?rev=0&sc=0 

Vcs-Svn:
svn://svn.debian.org/svn/debian-med/trunk/packages/beast-mcmc/trunk/
XS-Autobuild: yes
Homepage: http://beast.bio.ed.ac.uk/

Package: beast-mcmc
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
Description: Bayesian MCMC analysis of molecular sequences
BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
sequences. It is entirely orientated towards rooted, time-measured
phylogenies inferred using strict or relaxed molecular clock models. It
can be used as a method of reconstructing phylogenies but is also a
framework for testing evolutionary hypotheses without conditioning on a
single tree topology. BEAST uses MCMC to average over tree space, so that
each tree is weighted proportional to its posterior probability. Included
is a simple to use user-interface program for setting up standard
analyses and a suit of programs for analysing the results.
.
When publishing results using this software please cite:
Drummond AJ, Rambaut A (2007) "BEAST: Bayesian evolutionary analysis by
sampling trees." BMC Evolutionary Biology 7:214



Name: BEAST-MCMC
Source: http://beast-mcmc.googlecode.com/svn/trunk/

Copyright: © 2002-2006 Alexei Drummond and Andrew Rambaut
License: LGPL-2

BEAST is distributed under the terms of the GNU Lesser General Public
License.
See the notice in individual files and the file LICENSE for licensing
details.

On a Debian GNU/Linux system, the GNU Lesser GPL license version 2 is
included
in the file ‘/usr/share/common-licenses/LGPL-2’, and the GNU GPL license
version 2 is included in the file ‘/usr/share/common-licenses/GPL-2’.

License: other

BEAST includes software libraries from projects whose licensing
terms require that the following notices be included when they are
distributed in binary form and that the recipient be given a copy of
their respective licenses.

This product includes software developed by the
JDOM Project (http://www.jdom.org/)

This product includes software developed by
The Apache Software Foundation (http://www.apache.org/)

The license for JDOM can be read in the LICENSE.txt file in the
source distribution available at http://www.jdom.org/

The license for the Commons Math library can be read at
http://www.apache.org/licenses/LICENSE-2.0 or in the LICENSE.txt file
in the source distribution available at
http://jakarta.apache.org/commons/math/




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[Andreas Tille-5]

On Fri, Oct 23, 2009 at 02:01:55PM +0200, Felix Feyertag wrote:

>
> Source: beast-mcmc
> Section: science
> Priority: optional
> Maintainer: Debian Med Packaging Team  
> <debian-med-packaging@...>
> DM-Upload-Allowed: yes
> Uploaders: Felix Feyertag <felix.feyertag@...>
> Build-Depends: debhelper (>= 7)
> Standards-Version: 3.8.0
> Vcs-Browser:  
> http://svn.debian.org/wsvn/debian-med/trunk/packages/beast-mcmc/trunk/?rev=0&sc=0 
> Vcs-Svn:  
> svn://svn.debian.org/svn/debian-med/trunk/packages/beast-mcmc/trunk/
> ...

That's great and thanks for forewarding your ITP.  I just updated the
information (including publication) in task bio which will be available
on the tasks page after next cron job run.  It would be great if you
would commit your preliminary wotk to SVN as mentioned above to make
sure the link on the tasks page which will point to SVN will not be
broken.

Thanks for your interest

     Andreas.

--
http://fam-tille.de


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