CVS->SVN question

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CVS->SVN question

by Sheldon McKay-3 :: Rate this Message:

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Hi all,

How to I make sure the former CVS ID line is updated with each SVN commit?

e.g:  $Id: balloon.js,v 1.49 2009-08-29 11:20:46 sheldon_mckay Exp $

My last commit did not change the line.

Sheldon

--
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Cold Spring Harbor Laboratory
Office/Mobile:  516-367-6998 / 203-893-1682

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Re: CVS->SVN question

by Scott Cain-4 :: Rate this Message:

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Hi Sheldon,

I have no clue--that is dark magic as far as I can tell :-)  Rob, do
you have any idea?

Scott


On Wed, Nov 4, 2009 at 9:51 AM, Sheldon McKay <sheldon.mckay@...> wrote:

> Hi all,
>
> How to I make sure the former CVS ID line is updated with each SVN commit?
>
> e.g:  $Id: balloon.js,v 1.49 2009-08-29 11:20:46 sheldon_mckay Exp $
>
> My last commit did not change the line.
>
> Sheldon
>
> --
> Sheldon McKay, PhD
> Cold Spring Harbor Laboratory
> Office/Mobile:  516-367-6998 / 203-893-1682
>
> ------------------------------------------------------------------------------
> Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day
> trial. Simplify your report design, integration and deployment - and focus on
> what you do best, core application coding. Discover what's new with
> Crystal Reports now.  http://p.sf.net/sfu/bobj-july
> _______________________________________________
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> Gmod-gbrowse@...
> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>



--
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

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Re: CVS->SVN question

by Josh Goodman :: Rate this Message:

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Hi Sheldon,

You need to enable keyword substitution.

http://svnbook.red-bean.com/en/1.5/svn.advanced.props.special.keywords.html

Josh

On Wed, 4 Nov 2009, Sheldon McKay wrote:

> Hi all,
>
> How to I make sure the former CVS ID line is updated with each SVN commit?
>
> e.g:  $Id: balloon.js,v 1.49 2009-08-29 11:20:46 sheldon_mckay Exp $
>
> My last commit did not change the line.
>
> Sheldon
>
> --
> Sheldon McKay, PhD
> Cold Spring Harbor Laboratory
> Office/Mobile:  516-367-6998 / 203-893-1682
>
> ------------------------------------------------------------------------------
> Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day
> trial. Simplify your report design, integration and deployment - and focus on
> what you do best, core application coding. Discover what's new with
> Crystal Reports now.  http://p.sf.net/sfu/bobj-july
> _______________________________________________
> Gmod-gbrowse mailing list
> Gmod-gbrowse@...
> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>

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Re: CVS->SVN question

by Chris Fields-5 :: Rate this Message:

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I think you have to set svn props for that, see:

http://svnbook.red-bean.com/en/1.5/svn.advanced.props.special.keywords.html

chris

On Nov 4, 2009, at 8:51 AM, Sheldon McKay wrote:

> Hi all,
>
> How to I make sure the former CVS ID line is updated with each SVN  
> commit?
>
> e.g:  $Id: balloon.js,v 1.49 2009-08-29 11:20:46 sheldon_mckay Exp $
>
> My last commit did not change the line.
>
> Sheldon
>
> --
> Sheldon McKay, PhD
> Cold Spring Harbor Laboratory
> Office/Mobile:  516-367-6998 / 203-893-1682
>
> ------------------------------------------------------------------------------
> Let Crystal Reports handle the reporting - Free Crystal Reports 2008  
> 30-Day
> trial. Simplify your report design, integration and deployment - and  
> focus on
> what you do best, core application coding. Discover what's new with
> Crystal Reports now.  http://p.sf.net/sfu/bobj-july
> _______________________________________________
> Gmod-gbrowse mailing list
> Gmod-gbrowse@...
> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse


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Re: CVS->SVN question

by Sheldon McKay-3 :: Rate this Message:

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Thanks for the tips.

The answer to my question is the incantation below.  If this is
executed at the root of your working copy (checked out from SVN), it
should hopefully interpolate the familiar $Id:$ keyword from CVS on
SVN commits.

svn propset svn:keywords 'Id' -R *

Sheldon

On Wed, Nov 4, 2009 at 10:01 AM, Chris Fields <cjfields@...> wrote:

> I think you have to set svn props for that, see:
>
> http://svnbook.red-bean.com/en/1.5/svn.advanced.props.special.keywords.html
>
> chris
>
> On Nov 4, 2009, at 8:51 AM, Sheldon McKay wrote:
>
>> Hi all,
>>
>> How to I make sure the former CVS ID line is updated with each SVN commit?
>>
>> e.g:  $Id: balloon.js,v 1.49 2009-08-29 11:20:46 sheldon_mckay Exp $
>>
>> My last commit did not change the line.
>>
>> Sheldon
>>
>> --
>> Sheldon McKay, PhD
>> Cold Spring Harbor Laboratory
>> Office/Mobile:  516-367-6998 / 203-893-1682
>>
>>
>> ------------------------------------------------------------------------------
>> Let Crystal Reports handle the reporting - Free Crystal Reports 2008
>> 30-Day
>> trial. Simplify your report design, integration and deployment - and focus
>> on
>> what you do best, core application coding. Discover what's new with
>> Crystal Reports now.  http://p.sf.net/sfu/bobj-july
>> _______________________________________________
>> Gmod-gbrowse mailing list
>> Gmod-gbrowse@...
>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>
>



--
Sheldon McKay, PhD
Cold Spring Harbor Laboratory
Office/Mobile:  516-367-6998 / 203-893-1682

------------------------------------------------------------------------------
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Re: CVS->SVN question

by Josh Goodman :: Rate this Message:

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I forgot to mention that you can also configure your svn client to
automatically do this for certain file types.  This is done via your
~/.subversion/config file.  Look for the option enable-auto-props and the
'[auto-props]' section.

For example, a line like

*.pl = svn:keywords=Author Date Id HeadURL Revision

Would automatically do this for all perl source code.

Josh


On Wed, 4 Nov 2009, Sheldon McKay wrote:

> Thanks for the tips.
>
> The answer to my question is the incantation below.  If this is
> executed at the root of your working copy (checked out from SVN), it
> should hopefully interpolate the familiar $Id:$ keyword from CVS on
> SVN commits.
>
> svn propset svn:keywords 'Id' -R *
>
> Sheldon
>
> On Wed, Nov 4, 2009 at 10:01 AM, Chris Fields <cjfields@...> wrote:
>> I think you have to set svn props for that, see:
>>
>> http://svnbook.red-bean.com/en/1.5/svn.advanced.props.special.keywords.html
>>
>> chris
>>
>> On Nov 4, 2009, at 8:51 AM, Sheldon McKay wrote:
>>
>>> Hi all,
>>>
>>> How to I make sure the former CVS ID line is updated with each SVN commit?
>>>
>>> e.g:  $Id: balloon.js,v 1.49 2009-08-29 11:20:46 sheldon_mckay Exp $
>>>
>>> My last commit did not change the line.
>>>
>>> Sheldon
>>>
>>> --
>>> Sheldon McKay, PhD
>>> Cold Spring Harbor Laboratory
>>> Office/Mobile:  516-367-6998 / 203-893-1682
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> Let Crystal Reports handle the reporting - Free Crystal Reports 2008
>>> 30-Day
>>> trial. Simplify your report design, integration and deployment - and focus
>>> on
>>> what you do best, core application coding. Discover what's new with
>>> Crystal Reports now.  http://p.sf.net/sfu/bobj-july
>>> _______________________________________________
>>> Gmod-gbrowse mailing list
>>> Gmod-gbrowse@...
>>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>>
>>
>
>
>
> --
> Sheldon McKay, PhD
> Cold Spring Harbor Laboratory
> Office/Mobile:  516-367-6998 / 203-893-1682
>
> ------------------------------------------------------------------------------
> Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day
> trial. Simplify your report design, integration and deployment - and focus on
> what you do best, core application coding. Discover what's new with
> Crystal Reports now.  http://p.sf.net/sfu/bobj-july
> _______________________________________________
> Gmod-gbrowse mailing list
> Gmod-gbrowse@...
> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>
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Re: CVS->SVN question

by Chris Fields-5 :: Rate this Message:

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To add to that, here's BioPerl's current auto-props:

http://www.bioperl.org/wiki/Svn_auto-props

chris

On Nov 4, 2009, at 9:55 AM, Josh Goodman wrote:

>
> I forgot to mention that you can also configure your svn client to  
> automatically do this for certain file types.  This is done via your  
> ~/.subversion/config file.  Look for the option enable-auto-props  
> and the '[auto-props]' section.
>
> For example, a line like
>
> *.pl = svn:keywords=Author Date Id HeadURL Revision
>
> Would automatically do this for all perl source code.
>
> Josh
>
>
> On Wed, 4 Nov 2009, Sheldon McKay wrote:
>
>> Thanks for the tips.
>>
>> The answer to my question is the incantation below.  If this is
>> executed at the root of your working copy (checked out from SVN), it
>> should hopefully interpolate the familiar $Id:$ keyword from CVS on
>> SVN commits.
>>
>> svn propset svn:keywords 'Id' -R *
>>
>> Sheldon
>>
>> On Wed, Nov 4, 2009 at 10:01 AM, Chris Fields  
>> <cjfields@...> wrote:
>>> I think you have to set svn props for that, see:
>>>
>>> http://svnbook.red-bean.com/en/1.5/svn.advanced.props.special.keywords.html
>>>
>>> chris
>>>
>>> On Nov 4, 2009, at 8:51 AM, Sheldon McKay wrote:
>>>
>>>> Hi all,
>>>>
>>>> How to I make sure the former CVS ID line is updated with each  
>>>> SVN commit?
>>>>
>>>> e.g:  $Id: balloon.js,v 1.49 2009-08-29 11:20:46 sheldon_mckay  
>>>> Exp $
>>>>
>>>> My last commit did not change the line.
>>>>
>>>> Sheldon
>>>>
>>>> --
>>>> Sheldon McKay, PhD
>>>> Cold Spring Harbor Laboratory
>>>> Office/Mobile:  516-367-6998 / 203-893-1682
>>>>
>>>>
>>>> ------------------------------------------------------------------------------
>>>> Let Crystal Reports handle the reporting - Free Crystal Reports  
>>>> 2008
>>>> 30-Day
>>>> trial. Simplify your report design, integration and deployment -  
>>>> and focus
>>>> on
>>>> what you do best, core application coding. Discover what's new with
>>>> Crystal Reports now.  http://p.sf.net/sfu/bobj-july
>>>> _______________________________________________
>>>> Gmod-gbrowse mailing list
>>>> Gmod-gbrowse@...
>>>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>>>
>>>
>>
>>
>>
>> --
>> Sheldon McKay, PhD
>> Cold Spring Harbor Laboratory
>> Office/Mobile:  516-367-6998 / 203-893-1682
>>
>> ------------------------------------------------------------------------------
>> Let Crystal Reports handle the reporting - Free Crystal Reports  
>> 2008 30-Day
>> trial. Simplify your report design, integration and deployment -  
>> and focus on
>> what you do best, core application coding. Discover what's new with
>> Crystal Reports now.  http://p.sf.net/sfu/bobj-july
>> _______________________________________________
>> Gmod-gbrowse mailing list
>> Gmod-gbrowse@...
>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
> ------------------------------------------------------------------------------
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> 30-Day
> trial. Simplify your report design, integration and deployment - and  
> focus on
> what you do best, core application coding. Discover what's new with
> Crystal Reports now.  http://p.sf.net/sfu/bobj-july_______________________________________________
> Gmod-gbrowse mailing list
> Gmod-gbrowse@...
> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse


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extra tracks for plus and minus strand

by Jan-Ole Christian :: Rate this Message:

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Hello,
is it possible to include the strand in the track definition like

[myTrack]
feature = strand:type:source

so that I have extra tracks for each strand?
Regards,
Ole.


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Re: extra tracks for plus and minus strand

by Scott Cain-4 :: Rate this Message:

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Hi Ole,

There is not a way to have a single strand per track, however, you can  
do things like sort by strand (so that minus strand features could be  
below plus strand features in a track) or color by strand, both of  
which can be accomplished with callbacks in the configuration file.

Scott


On Nov 4, 2009, at 11:05 AM, Jan-Ole Christian wrote:

> Hello,
> is it possible to include the strand in the track definition like
>
> [myTrack]
> feature = strand:type:source
>
> so that I have extra tracks for each strand?
> Regards,
> Ole.
>
>
> ------------------------------------------------------------------------------
> Let Crystal Reports handle the reporting - Free Crystal Reports 2008  
> 30-Day
> trial. Simplify your report design, integration and deployment - and  
> focus on
> what you do best, core application coding. Discover what's new with
> Crystal Reports now.  http://p.sf.net/sfu/bobj-july
> _______________________________________________
> Gmod-gbrowse mailing list
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> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse

-----------------------------------------------------------------------
Scott Cain, Ph. D. scott at scottcain dot net
GMOD Coordinator (http://gmod.org/) 216-392-3087
Ontario Institute for Cancer Research





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Parent Message unknown Re: extra tracks for plus and minus strand

by Scott Cain-4 :: Rate this Message:

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Hi Ole,

Please keep responses on the mailing list.

The sort_order option in a more obscure (that is, not documented in  
the GBrowse Configure HOWTO) option.  You can find the documentation  
for it in the perldoc of Bio::Graphics::Panel.  To sort by strand, you  
don't even need a callback, just "sort_order = strand".  There is also  
an example of how to write a callback to do a more complicated sort.

For bumping, you need the "bump density" option, and it is described  
in the track defaults section of the configure document:

   http://gmod.org/wiki/GBrowse_Configuration_HOWTO#The_.5BTRACK_DEFAULTS.5D_section

Scott



On Nov 5, 2009, at 5:34 AM, Jan-Ole Christian wrote:

> Thank you for the answer!
> I am able to control colors etc. with callbacks. But I could not  
> find the documentation, how to control more than one thing (like  
> sort). Could you point me to the part of the documentation, where I  
> find how to access information about how many things are shown (for  
> bumping) and how they could be sorted? I really searched for it, but  
> I obviously overlooked it.
> Thank you,
> Ole.
>
>
> Scott Cain schrieb:
>> Hi Ole,
>>
>> There is not a way to have a single strand per track, however, you  
>> can do things like sort by strand (so that minus strand features  
>> could be below plus strand features in a track) or color by strand,  
>> both of which can be accomplished with callbacks in the  
>> configuration file.
>>
>> Scott
>>
>>
>> On Nov 4, 2009, at 11:05 AM, Jan-Ole Christian wrote:
>>
>>> Hello,
>>> is it possible to include the strand in the track definition like
>>>
>>> [myTrack]
>>> feature = strand:type:source
>>>
>>> so that I have extra tracks for each strand?
>>> Regards,
>>> Ole.
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> Let Crystal Reports handle the reporting - Free Crystal Reports  
>>> 2008 30-Day
>>> trial. Simplify your report design, integration and deployment -  
>>> and focus on
>>> what you do best, core application coding. Discover what's new with
>>> Crystal Reports now.  http://p.sf.net/sfu/bobj-july
>>> _______________________________________________
>>> Gmod-gbrowse mailing list
>>> Gmod-gbrowse@...
>>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>>
>> -----------------------------------------------------------------------
>> Scott Cain, Ph. D. scott at scottcain dot net
>> GMOD Coordinator (http://gmod.org/) 216-392-3087
>> Ontario Institute for Cancer Research
>>
>>
>>
>

-----------------------------------------------------------------------
Scott Cain, Ph. D. scott at scottcain dot net
GMOD Coordinator (http://gmod.org/) 216-392-3087
Ontario Institute for Cancer Research





------------------------------------------------------------------------------
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Re: extra tracks for plus and minus strand

by Jan-Ole Christian :: Rate this Message:

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Thank you for the quick answer!
Regarding the bumping, I want to "know" if the shown features are bumped
or not, so that I can change the e.g. the color or at best switch to
another glyph or track. The color of my features depends on the score.
If they are bumped, a feature with a lower score might cover a feature
with a higher score.
Regards,
Ole.

Am 05.11.2009 15:32, schrieb Scott Cain:

> Hi Ole,
>
> Please keep responses on the mailing list.
>
> The sort_order option in a more obscure (that is, not documented in
> the GBrowse Configure HOWTO) option.  You can find the documentation
> for it in the perldoc of Bio::Graphics::Panel.  To sort by strand, you
> don't even need a callback, just "sort_order = strand".  There is also
> an example of how to write a callback to do a more complicated sort.
>
> For bumping, you need the "bump density" option, and it is described
> in the track defaults section of the configure document:
>
>  
> http://gmod.org/wiki/GBrowse_Configuration_HOWTO#The_.5BTRACK_DEFAULTS.5D_section 
>
>
> Scott
>
>
>
> On Nov 5, 2009, at 5:34 AM, Jan-Ole Christian wrote:
>
>> Thank you for the answer!
>> I am able to control colors etc. with callbacks. But I could not find
>> the documentation, how to control more than one thing (like sort).
>> Could you point me to the part of the documentation, where I find how
>> to access information about how many things are shown (for bumping)
>> and how they could be sorted? I really searched for it, but I
>> obviously overlooked it.
>> Thank you,
>> Ole.
>>
>>
>> Scott Cain schrieb:
>>> Hi Ole,
>>>
>>> There is not a way to have a single strand per track, however, you
>>> can do things like sort by strand (so that minus strand features
>>> could be below plus strand features in a track) or color by strand,
>>> both of which can be accomplished with callbacks in the
>>> configuration file.
>>>
>>> Scott
>>>
>>>
>>> On Nov 4, 2009, at 11:05 AM, Jan-Ole Christian wrote:
>>>
>>>> Hello,
>>>> is it possible to include the strand in the track definition like
>>>>
>>>> [myTrack]
>>>> feature = strand:type:source
>>>>
>>>> so that I have extra tracks for each strand?
>>>> Regards,
>>>> Ole.
>>>>
>>>>
>>>> ------------------------------------------------------------------------------
>>>>
>>>> Let Crystal Reports handle the reporting - Free Crystal Reports
>>>> 2008 30-Day
>>>> trial. Simplify your report design, integration and deployment -
>>>> and focus on
>>>> what you do best, core application coding. Discover what's new with
>>>> Crystal Reports now.  http://p.sf.net/sfu/bobj-july
>>>> _______________________________________________
>>>> Gmod-gbrowse mailing list
>>>> Gmod-gbrowse@...
>>>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>>>
>>> -----------------------------------------------------------------------
>>> Scott Cain, Ph. D. scott at scottcain dot net
>>> GMOD Coordinator (http://gmod.org/) 216-392-3087
>>> Ontario Institute for Cancer Research
>>>
>>>
>>>
>>
>
> -----------------------------------------------------------------------
> Scott Cain, Ph. D. scott at scottcain dot net
> GMOD Coordinator (http://gmod.org/) 216-392-3087
> Ontario Institute for Cancer Research
>
>
>


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