Compile error on Ubuntu Intrepid
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Compile error on Ubuntu Intrepid
by Brian DeVries
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Howdy all,
I am compiling Yap 5.1.3 from source under Ubuntu Intrepid Ibex / 8.10. I have encountered a compiler error that appears to be new with this version of Ubuntu (e.g., https://bugs.launchpad.net/ubuntu/+source/hdf5/+bug/286565) based on the use of open() with the O_CREAT attribute. It seems you must also provide permission attributes for the creation of the file; if open() is called with 2 arguments, and the second argument includes O_CREAT, then a compiler error is raised. I have included the gcc --version output, as well as the output from the runs of configure and make for completeness. At the end of the email, I have included a patch that seems to fix the problem. The main things I'm not sure of regarding the patch are: 1) I am not sure whether the #include <sys/stat.h> at the top is platform-independent, or whether it should be inside a #ifdef of some sort 2) I am not sure whether the flags S_IRUSR and S_IWUSR are totally appropriate; the program runs after making these changes, and the file being created is a temporary file, so I would assume so. 3) Even among Unixes, I am not sure whether these flags are platform-independent, or whether they should be inside another #ifdef or something. As I said, Yap compiles and runs on my machine after making this modification (I did not do any extensive tests, simply started the program and tried asserting a few things to the database and running a few queries). Hope this helps! Thanks, ~Brian W. DeVries === GCC Version Output === .../Yap-5.1.3/arch % gcc --version gcc (Ubuntu 4.3.2-1ubuntu11) 4.3.2 Copyright (C) 2008 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. === configure Output === .../Yap-5.1.3/arch % ../configure --prefix=/home/contingencyplan/install checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking whether ln -s works... yes checking for a BSD-compatible install... /usr/bin/install -c checking for ranlib... ranlib checking for indent... no checking for ar... ar checking for mpicc... no checking for install-info... /usr/sbin/install-info checking for sh... /bin/bash checking for sin in -lm... yes checking for socket in -lsocket... no checking for getsockname in -lxnet... no checking for main in -lnsl... yes checking for tgetent in -ltermcap... no checking for main in -lncurses... no checking for readline in -lreadline... no checking for main in -lgmp... no checking how to run the C preprocessor... gcc -E checking for sys/wait.h that is POSIX.1 compatible... yes checking for restartable system calls... yes checking for dlopen in -ldl... yes checking for main in -llam... no checking for ANSI C header files... no checking for sys/wait.h that is POSIX.1 compatible... (cached) yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking direct.h usability... no checking direct.h presence... no checking for direct.h... no checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking fenv.h usability... yes checking fenv.h presence... yes checking for fenv.h... yes checking fpu_control.h usability... yes checking fpu_control.h presence... yes checking for fpu_control.h... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking io.h usability... no checking io.h presence... no checking for io.h... no checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking memory.h usability... yes checking memory.h presence... yes checking for memory.h... yes checking mpi.h usability... no checking mpi.h presence... no checking for mpi.h... no checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking siginfo.h usability... no checking siginfo.h presence... no checking for siginfo.h... no checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking string.h usability... yes checking string.h presence... yes checking for string.h... yes checking stropts.h usability... yes checking stropts.h presence... yes checking for stropts.h... yes checking sys/conf.h usability... no checking sys/conf.h presence... no checking for sys/conf.h... no checking sys/file.h usability... yes checking sys/file.h presence... yes checking for sys/file.h... yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/shm.h usability... yes checking sys/shm.h presence... yes checking for sys/shm.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/stat.h usability... yes checking sys/stat.h presence... yes checking for sys/stat.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking sys/types.h usability... yes checking sys/types.h presence... yes checking for sys/types.h... yes checking sys/ucontext.h usability... yes checking sys/ucontext.h presence... yes checking for sys/ucontext.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking unistd.h usability... yes checking unistd.h presence... yes checking for unistd.h... yes checking wctype.h usability... yes checking wctype.h presence... yes checking for wctype.h... yes checking winsock.h usability... no checking winsock.h presence... no checking for winsock.h... no checking winsock2.h usability... no checking winsock2.h presence... no checking for winsock2.h... no checking mach-o/dyld.h usability... no checking mach-o/dyld.h presence... no checking for mach-o/dyld.h... no checking gmp.h usability... no checking gmp.h presence... no checking for gmp.h... no checking readline/readline.h usability... no checking readline/readline.h presence... no checking for readline/readline.h... no checking for mpi.h... (cached) no checking mpe.h usability... no checking mpe.h presence... no checking for mpe.h... no checking for inline... inline checking whether struct tm is in sys/time.h or time.h... time.h checking for int *... yes checking size of int *... 8 checking for short int... yes checking size of short int... 2 checking for int... yes checking size of int... 4 checking for long int... yes checking size of long int... 8 checking for long long int... yes checking size of long long int... 8 checking for float... yes checking size of float... 4 checking for double... yes checking size of double... 8 checking for type of malloc... void * checking for gcc inline... yes checking for gcc threaded code... yes checking for IEEE floats... yes checking for sigsetjmp... yes checking for sigsegv... yes checking for sigprof... yes checking for siginfo... yes checking union wait... yes checking environ... yes checking return type of signal handlers... void checking for acosh... yes checking for asinh... yes checking for atanh... yes checking for chdir... yes checking for ctime... yes checking for dlopen... yes checking for dup2... yes checking for fesettrapenable... no checking for fgetpos... yes checking for finite... yes checking for getcwd... yes checking for getenv... yes checking for gethostbyname... yes checking for gethostid... yes checking for gethostname... yes checking for gethrtime... no checking for getpwnam... yes checking for getrusage... yes checking for gettimeofday... yes checking for getwd... yes checking for isatty... yes checking for isnan... yes checking for kill... yes checking for labs... yes checking for link... yes checking for lgamma... yes checking for localtime... yes checking for lstat... yes checking for mallinfo... yes checking for memcpy... yes checking for memmove... yes checking for mkstemp... yes checking for mktemp... yes checking for nanosleep... yes checking for mktime... yes checking for opendir... yes checking for putenv... yes checking for rand... yes checking for random... yes checking for readlink... yes checking for regexec... yes checking for rename... yes checking for rint... yes checking for rl_set_prompt... no checking for sbrk... yes checking for select... yes checking for setbuf... yes checking for setitimer... yes checking for setlinebuf... yes checking for sigaction... yes checking for siggetmask... yes checking for siginterrupt... yes checking for signal... yes checking for sigprocmask... yes checking for socket... yes checking for stat... yes checking for strchr... yes checking for strerror... yes checking for strncat... yes checking for strncpy... yes checking for strtod... yes checking for time... yes checking for times... yes checking for tmpnam... yes checking for usleep... yes checking for vsnprintf... yes checking for regexec... (cached) yes checking for NSLinkModule... no checking for alarm... yes checking for mmap... yes checking for popen... yes checking for shmat... yes checking for sleep... yes checking for system... yes checking for ttyname... yes checking for waitpid... yes checking for fetestexcept... yes checking for snprintf... yes checking for mpz_xor... no checking if fflush(NULL) clobbers input pipes... no no configure: creating ./config.status config.status: creating Makefile config.status: creating library/matrix/Makefile config.status: creating library/matlab/Makefile config.status: creating library/regex/Makefile config.status: creating library/system/Makefile config.status: creating library/random/Makefile config.status: creating library/yap2swi/Makefile config.status: creating library/mpi/Makefile config.status: creating .depend config.status: creating library/Makefile config.status: creating LGPL/Makefile config.status: creating LGPL/chr/Makefile config.status: creating LGPL/chr/chr_swi_bootstrap.yap config.status: creating CLPBN/Makefile config.status: creating LGPL/clp/Makefile config.status: creating GPL/clpqr/Makefile config.status: creating library/lammpi/Makefile config.status: creating library/tries/Makefile config.status: creating library/rltree/Makefile config.status: creating LGPL/swi_console/Makefile config.status: creating LGPL/JPL/Makefile config.status: creating LGPL/JPL/src/Makefile config.status: creating LGPL/JPL/java/Makefile config.status: creating LGPL/JPL/jpl_paths.yap config.status: creating GPL/http/Makefile config.status: creating GPL/Makefile config.status: creating cplint/Makefile config.status: creating config.h === make Output === .../Yap-5.1.3/arch % make gcc -c -O3 -fomit-frame-pointer -Wall -Wstrict-prototypes -Wmissing-prototypes -DCOROUTINING=1 -DRATIONAL_TREES=1 -DDEPTH_LIMIT=1 -DHAVE_CONFIG_H -I. -I../H -I../OPTYap -I../BEAM -I../MYDDAS -I../include -DYAP_VERSION=\"Yap-5.1.3\" -DPL_SRC_DIR=\"/home/contingencyplan/install/share/Yap/pl/\" ../console/yap.c -o yap.o ../console/yap.c: In function 'do_bootfile': ../console/yap.c:205: warning: format not a string literal and no format arguments In function 'strncat', inlined from 'exec_top_level' at ../console/yap.c:658, inlined from 'main' at ../console/yap.c:728: /usr/include/bits/string3.h:153: warning: call to __builtin___strncat_chk might overflow destination buffer gcc -c -O3 -fomit-frame-pointer -Wall -Wstrict-prototypes -Wmissing-prototypes -DCOROUTINING=1 -DRATIONAL_TREES=1 -DDEPTH_LIMIT=1 -DHAVE_CONFIG_H -I. -I../H -I../OPTYap -I../BEAM -I../MYDDAS ../C/agc.c -o agc.o gcc -c -O3 -fomit-frame-pointer -Wall -Wstrict-prototypes -Wmissing-prototypes -DCOROUTINING=1 -DRATIONAL_TREES=1 -DDEPTH_LIMIT=1 -DHAVE_CONFIG_H -I. -I../H -I../OPTYap -I../BEAM -I../MYDDAS ../C/absmi.c -o absmi.o gcc -c -O3 -fomit-frame-pointer -Wall -Wstrict-prototypes -Wmissing-prototypes -DCOROUTINING=1 -DRATIONAL_TREES=1 -DDEPTH_LIMIT=1 -DHAVE_CONFIG_H -I. -I../H -I../OPTYap -I../BEAM -I../MYDDAS ../C/adtdefs.c -o adtdefs.o gcc -c -O3 -fomit-frame-pointer -Wall -Wstrict-prototypes -Wmissing-prototypes -DCOROUTINING=1 -DRATIONAL_TREES=1 -DDEPTH_LIMIT=1 -DHAVE_CONFIG_H -I. -I../H -I../OPTYap -I../BEAM -I../MYDDAS ../C/alloc.c -o alloc.o In function 'open', inlined from 'ExtendWorkSpace' at ../C/alloc.c:945: /usr/include/bits/fcntl2.h:51: error: call to '__open_missing_mode' declared with attribute error: open with O_CREAT in second argument needs 3 arguments make: *** [alloc.o] Error 1 === Patch! === .../Yap-5.1.3/C % diff -U 5 alloc.c.orig alloc.c --- alloc.c.orig 2009-01-15 01:57:11.238819242 -0600 +++ alloc.c 2009-01-15 02:01:02.358818743 -0600 @@ -39,10 +39,11 @@ #if HAVE_UNISTD_H #include <unistd.h> #endif #include <stdlib.h> #include <stdio.h> +#include <sys/stat.h> #if __simplescalar__ #ifdef USE_MMAP #undef USE_MMAP #endif @@ -827,11 +828,11 @@ char file[YAP_FILENAME_MAX]; strcpy(file,"/tmp/mapfile"); itos(getpid(), &file[12]); #endif /* HAVE_TMPNAM */ #endif /* HAVE_MKSTEMP */ - fd = open(file, O_CREAT|O_RDWR); + fd = open(file, O_CREAT|O_RDWR, S_IRUSR | S_IWUSR); if (fd < 0) { Yap_Error(FATAL_ERROR, TermNil, "mmap could not open %s", file); return NULL; } if (lseek(fd, s, SEEK_SET) < 0) { @@ -940,11 +941,11 @@ char file[YAP_FILENAME_MAX]; strcpy(file,"/tmp/mapfile"); itos(getpid(), &file[12]); #endif /* HAVE_TMPNAM */ #endif /* HAVE_MKSTEMP */ - fd = open(file, O_CREAT|O_RDWR); + fd = open(file, O_CREAT|O_RDWR, S_IRUSR | S_IWUSR); if (fd < 0) { Yap_ErrorMessage = Yap_ErrorSay; snprintf4(Yap_ErrorMessage, MAX_ERROR_MSG_SIZE, "mmap could not open %s", file); Yap_PrologMode = OldPrologMode; ------------------------------------------------------------------------------ This SF.net email is sponsored by: SourcForge Community SourceForge wants to tell your story. http://p.sf.net/sfu/sf-spreadtheword _______________________________________________ Yap-users mailing list Yap-users@... https://lists.sourceforge.net/lists/listinfo/yap-users |
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Re: Compile error on Ubuntu Intrepid
by Vitor Santos Costa-2
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Dear Brian,
Thanks! I actually use Ubuntu a lot and had stumbled into this one. Please look at: http://gitorious.org/projects/yap-git for a pre-release of Yap-5.1.4. This is only a temporary abode while I settle with git, that's why it hasn't been as widely adverted. Cheers Vitor 2009/1/15 Brian DeVries <contingencyplan@...>: > Howdy all, > > I am compiling Yap 5.1.3 from source under Ubuntu Intrepid Ibex / 8.10. I > have encountered a compiler error that appears to be new with this version > of Ubuntu (e.g., https://bugs.launchpad.net/ubuntu/+source/hdf5/+bug/286565) > based on the use of open() with the O_CREAT attribute. It seems you must > also provide permission attributes for the creation of the file; if open() > is called with 2 arguments, and the second argument includes O_CREAT, then a > compiler error is raised. > > I have included the gcc --version output, as well as the output from the > runs of configure and make for completeness. > > At the end of the email, I have included a patch that seems to fix the > problem. The main things I'm not sure of regarding the patch are: > > 1) I am not sure whether the #include <sys/stat.h> at the top is > platform-independent, or whether it should be inside a #ifdef of some sort > 2) I am not sure whether the flags S_IRUSR and S_IWUSR are totally > appropriate; the program runs after making these changes, and the file being > created is a temporary file, so I would assume so. > 3) Even among Unixes, I am not sure whether these flags are > platform-independent, or whether they should be inside another #ifdef or > something. > > As I said, Yap compiles and runs on my machine after making this > modification (I did not do any extensive tests, simply started the program > and tried asserting a few things to the database and running a few queries). > > Hope this helps! Thanks, > ~Brian W. DeVries > > > === GCC Version Output === > > .../Yap-5.1.3/arch % gcc --version > gcc (Ubuntu 4.3.2-1ubuntu11) 4.3.2 > Copyright (C) 2008 Free Software Foundation, Inc. > This is free software; see the source for copying conditions. There is NO > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. > > > === configure Output === > > .../Yap-5.1.3/arch % ../configure --prefix=/home/contingencyplan/install > checking for gcc... gcc > checking for C compiler default output file name... a.out > checking whether the C compiler works... yes > checking whether we are cross compiling... no > checking for suffix of executables... > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc accepts -g... yes > checking for gcc option to accept ISO C89... none needed > checking build system type... x86_64-unknown-linux-gnu > checking host system type... x86_64-unknown-linux-gnu > checking target system type... x86_64-unknown-linux-gnu > checking whether ln -s works... yes > checking for a BSD-compatible install... /usr/bin/install -c > checking for ranlib... ranlib > checking for indent... no > checking for ar... ar > checking for mpicc... no > checking for install-info... /usr/sbin/install-info > checking for sh... /bin/bash > checking for sin in -lm... yes > checking for socket in -lsocket... no > checking for getsockname in -lxnet... no > checking for main in -lnsl... yes > checking for tgetent in -ltermcap... no > checking for main in -lncurses... no > checking for readline in -lreadline... no > checking for main in -lgmp... no > checking how to run the C preprocessor... gcc -E > checking for sys/wait.h that is POSIX.1 compatible... yes > checking for restartable system calls... yes > checking for dlopen in -ldl... yes > checking for main in -llam... no > checking for ANSI C header files... no > checking for sys/wait.h that is POSIX.1 compatible... (cached) yes > checking arpa/inet.h usability... yes > checking arpa/inet.h presence... yes > checking for arpa/inet.h... yes > checking ctype.h usability... yes > checking ctype.h presence... yes > checking for ctype.h... yes > checking direct.h usability... no > checking direct.h presence... no > checking for direct.h... no > checking dirent.h usability... yes > checking dirent.h presence... yes > checking for dirent.h... yes > checking dlfcn.h usability... yes > checking dlfcn.h presence... yes > checking for dlfcn.h... yes > checking errno.h usability... yes > checking errno.h presence... yes > checking for errno.h... yes > checking fcntl.h usability... yes > checking fcntl.h presence... yes > checking for fcntl.h... yes > checking fenv.h usability... yes > checking fenv.h presence... yes > checking for fenv.h... yes > checking fpu_control.h usability... yes > checking fpu_control.h presence... yes > checking for fpu_control.h... yes > checking ieeefp.h usability... no > checking ieeefp.h presence... no > checking for ieeefp.h... no > checking io.h usability... no > checking io.h presence... no > checking for io.h... no > checking limits.h usability... yes > checking limits.h presence... yes > checking for limits.h... yes > checking malloc.h usability... yes > checking malloc.h presence... yes > checking for malloc.h... yes > checking math.h usability... yes > checking math.h presence... yes > checking for math.h... yes > checking memory.h usability... yes > checking memory.h presence... yes > checking for memory.h... yes > checking mpi.h usability... no > checking mpi.h presence... no > checking for mpi.h... no > checking netdb.h usability... yes > checking netdb.h presence... yes > checking for netdb.h... yes > checking netinet/in.h usability... yes > checking netinet/in.h presence... yes > checking for netinet/in.h... yes > checking regex.h usability... yes > checking regex.h presence... yes > checking for regex.h... yes > checking siginfo.h usability... no > checking siginfo.h presence... no > checking for siginfo.h... no > checking signal.h usability... yes > checking signal.h presence... yes > checking for signal.h... yes > checking stdarg.h usability... yes > checking stdarg.h presence... yes > checking for stdarg.h... yes > checking string.h usability... yes > checking string.h presence... yes > checking for string.h... yes > checking stropts.h usability... yes > checking stropts.h presence... yes > checking for stropts.h... yes > checking sys/conf.h usability... no > checking sys/conf.h presence... no > checking for sys/conf.h... no > checking sys/file.h usability... yes > checking sys/file.h presence... yes > checking for sys/file.h... yes > checking sys/mman.h usability... yes > checking sys/mman.h presence... yes > checking for sys/mman.h... yes > checking sys/param.h usability... yes > checking sys/param.h presence... yes > checking for sys/param.h... yes > checking sys/resource.h usability... yes > checking sys/resource.h presence... yes > checking for sys/resource.h... yes > checking sys/select.h usability... yes > checking sys/select.h presence... yes > checking for sys/select.h... yes > checking sys/shm.h usability... yes > checking sys/shm.h presence... yes > checking for sys/shm.h... yes > checking sys/socket.h usability... yes > checking sys/socket.h presence... yes > checking for sys/socket.h... yes > checking sys/stat.h usability... yes > checking sys/stat.h presence... yes > checking for sys/stat.h... yes > checking sys/time.h usability... yes > checking sys/time.h presence... yes > checking for sys/time.h... yes > checking sys/times.h usability... yes > checking sys/times.h presence... yes > checking for sys/times.h... yes > checking sys/types.h usability... yes > checking sys/types.h presence... yes > checking for sys/types.h... yes > checking sys/ucontext.h usability... yes > checking sys/ucontext.h presence... yes > checking for sys/ucontext.h... yes > checking sys/un.h usability... yes > checking sys/un.h presence... yes > checking for sys/un.h... yes > checking time.h usability... yes > checking time.h presence... yes > checking for time.h... yes > checking unistd.h usability... yes > checking unistd.h presence... yes > checking for unistd.h... yes > checking wctype.h usability... yes > checking wctype.h presence... yes > checking for wctype.h... yes > checking winsock.h usability... no > checking winsock.h presence... no > checking for winsock.h... no > checking winsock2.h usability... no > checking winsock2.h presence... no > checking for winsock2.h... no > checking mach-o/dyld.h usability... no > checking mach-o/dyld.h presence... no > checking for mach-o/dyld.h... no > checking gmp.h usability... no > checking gmp.h presence... no > checking for gmp.h... no > checking readline/readline.h usability... no > checking readline/readline.h presence... no > checking for readline/readline.h... no > checking for mpi.h... (cached) no > checking mpe.h usability... no > checking mpe.h presence... no > checking for mpe.h... no > checking for inline... inline > checking whether struct tm is in sys/time.h or time.h... time.h > checking for int *... yes > checking size of int *... 8 > checking for short int... yes > checking size of short int... 2 > checking for int... yes > checking size of int... 4 > checking for long int... yes > checking size of long int... 8 > checking for long long int... yes > checking size of long long int... 8 > checking for float... yes > checking size of float... 4 > checking for double... yes > checking size of double... 8 > checking for type of malloc... void * > checking for gcc inline... yes > checking for gcc threaded code... yes > checking for IEEE floats... yes > checking for sigsetjmp... yes > checking for sigsegv... yes > checking for sigprof... yes > checking for siginfo... yes > checking union wait... yes > checking environ... yes > checking return type of signal handlers... void > checking for acosh... yes > checking for asinh... yes > checking for atanh... yes > checking for chdir... yes > checking for ctime... yes > checking for dlopen... yes > checking for dup2... yes > checking for fesettrapenable... no > checking for fgetpos... yes > checking for finite... yes > checking for getcwd... yes > checking for getenv... yes > checking for gethostbyname... yes > checking for gethostid... yes > checking for gethostname... yes > checking for gethrtime... no > checking for getpwnam... yes > checking for getrusage... yes > checking for gettimeofday... yes > checking for getwd... yes > checking for isatty... yes > checking for isnan... yes > checking for kill... yes > checking for labs... yes > checking for link... yes > checking for lgamma... yes > checking for localtime... yes > checking for lstat... yes > checking for mallinfo... yes > checking for memcpy... yes > checking for memmove... yes > checking for mkstemp... yes > checking for mktemp... yes > checking for nanosleep... yes > checking for mktime... yes > checking for opendir... yes > checking for putenv... yes > checking for rand... yes > checking for random... yes > checking for readlink... yes > checking for regexec... yes > checking for rename... yes > checking for rint... yes > checking for rl_set_prompt... no > checking for sbrk... yes > checking for select... yes > checking for setbuf... yes > checking for setitimer... yes > checking for setlinebuf... yes > checking for sigaction... yes > checking for siggetmask... yes > checking for siginterrupt... yes > checking for signal... yes > checking for sigprocmask... yes > checking for socket... yes > checking for stat... yes > checking for strchr... yes > checking for strerror... yes > checking for strncat... yes > checking for strncpy... yes > checking for strtod... yes > checking for time... yes > checking for times... yes > checking for tmpnam... yes > checking for usleep... yes > checking for vsnprintf... yes > checking for regexec... (cached) yes > checking for NSLinkModule... no > checking for alarm... yes > checking for mmap... yes > checking for popen... yes > checking for shmat... yes > checking for sleep... yes > checking for system... yes > checking for ttyname... yes > checking for waitpid... yes > checking for fetestexcept... yes > checking for snprintf... yes > checking for mpz_xor... no > checking if fflush(NULL) clobbers input pipes... no > no > configure: creating ./config.status > config.status: creating Makefile > config.status: creating library/matrix/Makefile > config.status: creating library/matlab/Makefile > config.status: creating library/regex/Makefile > config.status: creating library/system/Makefile > config.status: creating library/random/Makefile > config.status: creating library/yap2swi/Makefile > config.status: creating library/mpi/Makefile > config.status: creating .depend > config.status: creating library/Makefile > config.status: creating LGPL/Makefile > config.status: creating LGPL/chr/Makefile > config.status: creating LGPL/chr/chr_swi_bootstrap.yap > config.status: creating CLPBN/Makefile > config.status: creating LGPL/clp/Makefile > config.status: creating GPL/clpqr/Makefile > config.status: creating library/lammpi/Makefile > config.status: creating library/tries/Makefile > config.status: creating library/rltree/Makefile > config.status: creating LGPL/swi_console/Makefile > config.status: creating LGPL/JPL/Makefile > config.status: creating LGPL/JPL/src/Makefile > config.status: creating LGPL/JPL/java/Makefile > config.status: creating LGPL/JPL/jpl_paths.yap > config.status: creating GPL/http/Makefile > config.status: creating GPL/Makefile > config.status: creating cplint/Makefile > config.status: creating config.h > > > === make Output === > > .../Yap-5.1.3/arch % make > gcc -c -O3 -fomit-frame-pointer -Wall -Wstrict-prototypes > -Wmissing-prototypes -DCOROUTINING=1 -DRATIONAL_TREES=1 -DDEPTH_LIMIT=1 > -DHAVE_CONFIG_H -I. -I../H -I../OPTYap -I../BEAM -I../MYDDAS -I../include > -DYAP_VERSION=\"Yap-5.1.3\" > -DPL_SRC_DIR=\"/home/contingencyplan/install/share/Yap/pl/\" > ../console/yap.c -o yap.o > ../console/yap.c: In function 'do_bootfile': > ../console/yap.c:205: warning: format not a string literal and no format > arguments > In function 'strncat', > inlined from 'exec_top_level' at ../console/yap.c:658, > inlined from 'main' at ../console/yap.c:728: > /usr/include/bits/string3.h:153: warning: call to __builtin___strncat_chk > might overflow destination buffer > gcc -c -O3 -fomit-frame-pointer -Wall -Wstrict-prototypes > -Wmissing-prototypes -DCOROUTINING=1 -DRATIONAL_TREES=1 -DDEPTH_LIMIT=1 > -DHAVE_CONFIG_H -I. -I../H -I../OPTYap -I../BEAM -I../MYDDAS ../C/agc.c -o > agc.o > gcc -c -O3 -fomit-frame-pointer -Wall -Wstrict-prototypes > -Wmissing-prototypes -DCOROUTINING=1 -DRATIONAL_TREES=1 -DDEPTH_LIMIT=1 > -DHAVE_CONFIG_H -I. -I../H -I../OPTYap -I../BEAM -I../MYDDAS ../C/absmi.c > -o absmi.o > gcc -c -O3 -fomit-frame-pointer -Wall -Wstrict-prototypes > -Wmissing-prototypes -DCOROUTINING=1 -DRATIONAL_TREES=1 -DDEPTH_LIMIT=1 > -DHAVE_CONFIG_H -I. -I../H -I../OPTYap -I../BEAM -I../MYDDAS ../C/adtdefs.c > -o adtdefs.o > gcc -c -O3 -fomit-frame-pointer -Wall -Wstrict-prototypes > -Wmissing-prototypes -DCOROUTINING=1 -DRATIONAL_TREES=1 -DDEPTH_LIMIT=1 > -DHAVE_CONFIG_H -I. -I../H -I../OPTYap -I../BEAM -I../MYDDAS ../C/alloc.c -o > alloc.o > In function 'open', > inlined from 'ExtendWorkSpace' at ../C/alloc.c:945: > /usr/include/bits/fcntl2.h:51: error: call to '__open_missing_mode' declared > with attribute error: open with O_CREAT in second argument needs 3 arguments > make: *** [alloc.o] Error 1 > > > === Patch! === > > .../Yap-5.1.3/C % diff -U 5 alloc.c.orig alloc.c > > > --- alloc.c.orig 2009-01-15 01:57:11.238819242 -0600 > +++ alloc.c 2009-01-15 02:01:02.358818743 -0600 > @@ -39,10 +39,11 @@ > #if HAVE_UNISTD_H > #include <unistd.h> > #endif > #include <stdlib.h> > #include <stdio.h> > +#include <sys/stat.h> > > #if __simplescalar__ > #ifdef USE_MMAP > #undef USE_MMAP > #endif > @@ -827,11 +828,11 @@ > char file[YAP_FILENAME_MAX]; > strcpy(file,"/tmp/mapfile"); > itos(getpid(), &file[12]); > #endif /* HAVE_TMPNAM */ > #endif /* HAVE_MKSTEMP */ > - fd = open(file, O_CREAT|O_RDWR); > + fd = open(file, O_CREAT|O_RDWR, S_IRUSR | S_IWUSR); > if (fd < 0) { > Yap_Error(FATAL_ERROR, TermNil, "mmap could not open %s", file); > return NULL; > } > if (lseek(fd, s, SEEK_SET) < 0) { > @@ -940,11 +941,11 @@ > char file[YAP_FILENAME_MAX]; > strcpy(file,"/tmp/mapfile"); > itos(getpid(), &file[12]); > #endif /* HAVE_TMPNAM */ > #endif /* HAVE_MKSTEMP */ > - fd = open(file, O_CREAT|O_RDWR); > + fd = open(file, O_CREAT|O_RDWR, S_IRUSR | S_IWUSR); > if (fd < 0) { > Yap_ErrorMessage = Yap_ErrorSay; > snprintf4(Yap_ErrorMessage, MAX_ERROR_MSG_SIZE, > "mmap could not open %s", file); > Yap_PrologMode = OldPrologMode; > > > ------------------------------------------------------------------------------ > This SF.net email is sponsored by: > SourcForge Community > SourceForge wants to tell your story. > http://p.sf.net/sfu/sf-spreadtheword > _______________________________________________ > Yap-users mailing list > Yap-users@... > https://lists.sourceforge.net/lists/listinfo/yap-users > > ------------------------------------------------------------------------------ This SF.net email is sponsored by: SourcForge Community SourceForge wants to tell your story. http://p.sf.net/sfu/sf-spreadtheword _______________________________________________ Yap-users mailing list Yap-users@... https://lists.sourceforge.net/lists/listinfo/yap-users |
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