Errors while installing gbrowse2
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Errors while installing gbrowse2
by Wes Barris
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I am installing gbrowse2 on a system that is currently running gbrowse1.71b.
I have checked out revision 22338 of gbrowse2. This is my Build.PL command: perl Build.PL --apachemodules=/htdocs/apache-httpd/lib \ --cgibin=/htdocs/gbrowse2/cgi-bin \ --conf=/htdocs/gbrowse2/conf \ --htdocs=/htdocs/gbrowse2/htdocs \ --databases=/htdocs/gbrowse2/databases \ --tmp=/htdocs/gbrowse2/tmp \ --portdemo=8080 \ --installconf=n \ --installetc=n \ --wwwuser=nobody ./Build test succeeds. The install step has some errors: sudo ./Build install uninst=1 . . . *** SELinux detected -- fixing permissions *** /usr/bin/chcon: /htdocs/gbrowse2/htdocs/i: No such file or directory /usr/bin/chcon: failed to change context of /htdocs/gbrowse2/tmp to root:object_r:httpd_sys_content_rw_t: Invalid argument Use of uninitialized value in concatenation (.) or string at /usr/local/src/bioinformatics/gbrowse2/Generic-Genome-Browser/install_util/GBrowseInstall.pm line 419, <GEN173> line 28. /usr/bin/chcon: too few arguments Try `/usr/bin/chcon --help' for more information. ***INSTALLATION COMPLETE*** Load http://localhost/htdocs for demo and documentation I don't know whether the above errors are preventing the database directory from being created: wes@bioweb> pwd /htdocs/gbrowse2 wes@bioweb> ls -la total 44 drwxr-xr-x 6 wes root 4096 Dec 8 15:04 . drwxr-xr-x 20 root root 4096 Sep 28 13:33 .. drwxr-xr-x 2 root root 4096 Dec 8 15:04 cgi-bin drwxr-xr-x 6 root root 4096 Dec 8 15:04 conf drwxr-xr-x 6 root root 4096 Dec 8 15:04 htdocs drwxr-xr-x 2 nobody nobody 4096 Dec 8 15:04 tmp wes@bioweb> ls -l htdocs/i lrwxrwxrwx 1 nobody root 27 Dec 8 15:04 htdocs/i -> /htdocs/gbrowse2/tmp/images wes@bioweb> ls -dZ tmp drwxr-xr-x nobody nobody root:object_r:file_t tmp wes@bioweb> Many of the config files have a '.new' extension: wes@bioweb> ls -l conf total 124 -r--r--r-- 1 root root 1636 Dec 4 08:34 detail_select_menu.conf -r--r--r-- 1 root root 2711 Dec 4 08:34 enzymes.txt -r--r--r-- 1 root root 4305 Dec 4 08:34 GBrowse.conf drwxr-xr-x 2 root root 4096 Dec 8 15:04 languages -r--r--r-- 1 root root 1398 Dec 4 08:34 log4perl.conf drwxr-xr-x 2 root root 4096 Dec 8 15:04 MobyServices drwxr-xr-x 2 root root 4096 Dec 8 15:04 plugins -r--r--r-- 1 root root 3285 Dec 4 08:34 pop_demo.conf -r--r--r-- 1 root root 304 Dec 4 08:34 slave_preload.conf.new -r--r--r-- 1 root root 1822 Dec 4 08:34 submitter_plugin.conf drwxr-xr-x 2 root root 4096 Dec 8 15:04 themes -r--r--r-- 1 root root 7099 Dec 4 08:34 yeast_chr1+2.conf.new -r--r--r-- 1 root root 7165 Dec 4 08:34 yeast_renderfarm.conf.new -r--r--r-- 1 root root 3854 Dec 4 08:34 yeast_simple.conf.new Same problem with the plugins directory: wes@bioweb> ls -l conf/plugins total 336 -r--r--r-- 1 root root 13442 Dec 4 08:34 Aligner.pm.new -r--r--r-- 1 root root 7680 Dec 4 08:34 AlignTwoSequences.pm.new -r--r--r-- 1 root root 5208 Dec 4 08:34 AttributeHiliter.pm.new -r--r--r-- 1 root root 9593 Dec 4 08:34 BatchDumper.pm.new -r--r--r-- 1 root root 5608 Dec 4 08:34 Blat.pm.new -r--r--r-- 1 root root 6828 Dec 4 08:34 CMapDumper.pm.new -r--r--r-- 1 root root 3678 Dec 4 08:34 CreateBlastDB.pm.new -r--r--r-- 1 root root 8532 Dec 4 08:34 FastaDumper.pm.new -r--r--r-- 1 root root 3351 Dec 4 08:34 FBTableDumper.pm.new -r--r--r-- 1 root root 3577 Dec 4 08:34 FilterTest.pm.new -r--r--r-- 1 root root 4198 Dec 4 08:34 GeneFinder.pm.new -r--r--r-- 1 root root 4938 Dec 4 08:34 OligoFinder.pm.new -r--r--r-- 1 root root 39755 Dec 4 08:34 PrimerDesigner.pm.new -r--r--r-- 1 root root 8310 Dec 4 08:34 ProteinDumper.pm.new -r--r--r-- 1 root root 3364 Dec 4 08:34 RandomGene.pm.new -r--r--r-- 1 root root 4853 Dec 4 08:34 RestrictionAnnotator.pm.new -r--r--r-- 1 root root 8529 Dec 4 08:34 SequenceDumper.pm.new -r--r--r-- 1 root root 2722 Dec 4 08:34 SimpleTrackFinder.pm.new -r--r--r-- 1 root root 2497 Dec 4 08:34 SinWave.pm.new -r--r--r-- 1 root root 4404 Dec 4 08:34 SourceTrackFinder.pm.new -r--r--r-- 1 root root 18287 Dec 4 08:34 Spectrogram.pm.new -r--r--r-- 1 root root 5363 Dec 4 08:34 Submitter.pm.new -r--r--r-- 1 root root 388 Dec 4 08:34 TestFinder.pm.new -r--r--r-- 1 root root 608 Dec 4 08:34 test.pm.new -r--r--r-- 1 root root 6422 Dec 4 08:34 TrackDumper.pm.new -- Wes Barris <wes.barris@...> ------------------------------------------------------------------------------ Return on Information: Google Enterprise Search pays you back Get the facts. http://p.sf.net/sfu/google-dev2dev _______________________________________________ Gmod-gbrowse mailing list Gmod-gbrowse@... https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse |
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Re: Errors while installing gbrowse2
by Lincoln Stein-3
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Hi Wes,
You may need to use --install_base to change the location of the libraries as well: perl Build.PL --apachemodules=/htdocs/apache-httpd/lib \ --cgibin=/htdocs/gbrowse2/cgi-bin \ --conf=/htdocs/gbrowse2/conf \ --htdocs=/htdocs/gbrowse2/htdocs \ --databases=/htdocs/gbrowse2/databases \ --tmp=/htdocs/gbrowse2/tmp \ --portdemo=8080 \ --installconf=n \ --installetc=n \ --wwwuser=nobody \ --install_base=/usr/share/gbrowse2/lib When you initially start, do you have a directory named /htdocs? I'm not sure where the chcon errors are coming from - I will need to test on an SELinux system.
The .new paths are mystifying. I will try to figure this out. Lincoln On Tue, Dec 8, 2009 at 12:15 AM, Wes Barris <wes.barris@...> wrote: I am installing gbrowse2 on a system that is currently running gbrowse1.71b. -- Lincoln D. Stein Director, Informatics and Biocomputing Platform Ontario Institute for Cancer Research 101 College St., Suite 800 Toronto, ON, Canada M5G0A3 416 673-8514 Assistant: Renata Musa <Renata.Musa@...> ------------------------------------------------------------------------------ Return on Information: Google Enterprise Search pays you back Get the facts. http://p.sf.net/sfu/google-dev2dev _______________________________________________ Gmod-gbrowse mailing list Gmod-gbrowse@... https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse |
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Re: Errors while installing gbrowse2
by Wes Barris
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Lincoln Stein wrote:
> Hi Wes, > > You may need to use --install_base to change the location of the > libraries as well: > > perl Build.PL --apachemodules=/htdocs/apache-httpd/lib \ > --cgibin=/htdocs/gbrowse2/cgi-bin \ > --conf=/htdocs/gbrowse2/conf \ > --htdocs=/htdocs/gbrowse2/htdocs \ > --databases=/htdocs/gbrowse2/databases \ > --tmp=/htdocs/gbrowse2/tmp \ > --portdemo=8080 \ > --installconf=n \ > --installetc=n \ > --wwwuser=nobody \ > --install_base=/usr/share/gbrowse2/lib I just added that flag and reinstalled. However, the errors I am getting indicate that I have to tell gbrowse where to look for the new files. Should I go through and delete any Browser2 tree under /usr/lib/perl5 or set an environment variable or? [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render.pm line 726. [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1615. [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 200. [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. [Wed Dec 09 09:42:48 2009] [error] [client 140.253.153.217] Can't locate object method "method" via package "Bio::DB::SeqFeature::Segment" at /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Karyotype.pm line 343. > When you initially start, do you have a directory named /htdocs? I'm not > sure where the chcon errors are coming from - I will need to test on an > SELinux system. Yes. Before I install gbrowse2, the /htdocs/gbrowse2 directory exists. > The .new paths are mystifying. I will try to figure this out. > > Lincoln > > On Tue, Dec 8, 2009 at 12:15 AM, Wes Barris <wes.barris@...> wrote: > > I am installing gbrowse2 on a system that is currently running > gbrowse1.71b. > I have checked out revision 22338 of gbrowse2. This is my Build.PL > command: > > perl Build.PL --apachemodules=/htdocs/apache-httpd/lib \ > --cgibin=/htdocs/gbrowse2/cgi-bin \ > --conf=/htdocs/gbrowse2/conf \ > --htdocs=/htdocs/gbrowse2/htdocs \ > --databases=/htdocs/gbrowse2/databases \ > --tmp=/htdocs/gbrowse2/tmp \ > --portdemo=8080 \ > --installconf=n \ > --installetc=n \ > --wwwuser=nobody > > ./Build test succeeds. > > The install step has some errors: > > sudo ./Build install uninst=1 > . > . > . > *** SELinux detected -- fixing permissions *** > /usr/bin/chcon: /htdocs/gbrowse2/htdocs/i: No such file or directory > /usr/bin/chcon: failed to change context of /htdocs/gbrowse2/tmp to > root:object_r:httpd_sys_content_rw_t: Invalid argument > Use of uninitialized value in concatenation (.) or string at > /usr/local/src/bioinformatics/gbrowse2/Generic-Genome-Browser/install_util/GBrowseInstall.pm > line 419, <GEN173> line 28. > /usr/bin/chcon: too few arguments > Try `/usr/bin/chcon --help' for more information. > > ***INSTALLATION COMPLETE*** > Load http://localhost/htdocs for demo and documentation > > I don't know whether the above errors are preventing the database > directory from being created: > > wes@bioweb> pwd > /htdocs/gbrowse2 > wes@bioweb> ls -la > total 44 > drwxr-xr-x 6 wes root 4096 Dec 8 15:04 . > drwxr-xr-x 20 root root 4096 Sep 28 13:33 .. > drwxr-xr-x 2 root root 4096 Dec 8 15:04 cgi-bin > drwxr-xr-x 6 root root 4096 Dec 8 15:04 conf > drwxr-xr-x 6 root root 4096 Dec 8 15:04 htdocs > drwxr-xr-x 2 nobody nobody 4096 Dec 8 15:04 tmp > wes@bioweb> ls -l htdocs/i > lrwxrwxrwx 1 nobody root 27 Dec 8 15:04 htdocs/i -> > /htdocs/gbrowse2/tmp/images > wes@bioweb> ls -dZ tmp > drwxr-xr-x nobody nobody root:object_r:file_t tmp > wes@bioweb> > > Many of the config files have a '.new' extension: > > wes@bioweb> ls -l conf > total 124 > -r--r--r-- 1 root root 1636 Dec 4 08:34 detail_select_menu.conf > -r--r--r-- 1 root root 2711 Dec 4 08:34 enzymes.txt > -r--r--r-- 1 root root 4305 Dec 4 08:34 GBrowse.conf > drwxr-xr-x 2 root root 4096 Dec 8 15:04 languages > -r--r--r-- 1 root root 1398 Dec 4 08:34 log4perl.conf > drwxr-xr-x 2 root root 4096 Dec 8 15:04 MobyServices > drwxr-xr-x 2 root root 4096 Dec 8 15:04 plugins > -r--r--r-- 1 root root 3285 Dec 4 08:34 pop_demo.conf > -r--r--r-- 1 root root 304 Dec 4 08:34 slave_preload.conf.new > -r--r--r-- 1 root root 1822 Dec 4 08:34 submitter_plugin.conf > drwxr-xr-x 2 root root 4096 Dec 8 15:04 themes > -r--r--r-- 1 root root 7099 Dec 4 08:34 yeast_chr1+2.conf.new > -r--r--r-- 1 root root 7165 Dec 4 08:34 yeast_renderfarm.conf.new > -r--r--r-- 1 root root 3854 Dec 4 08:34 yeast_simple.conf.new > > Same problem with the plugins directory: > > wes@bioweb> ls -l conf/plugins > total 336 > -r--r--r-- 1 root root 13442 Dec 4 08:34 Aligner.pm.new > -r--r--r-- 1 root root 7680 Dec 4 08:34 AlignTwoSequences.pm.new > -r--r--r-- 1 root root 5208 Dec 4 08:34 AttributeHiliter.pm.new > -r--r--r-- 1 root root 9593 Dec 4 08:34 BatchDumper.pm.new > -r--r--r-- 1 root root 5608 Dec 4 08:34 Blat.pm.new > -r--r--r-- 1 root root 6828 Dec 4 08:34 CMapDumper.pm.new > -r--r--r-- 1 root root 3678 Dec 4 08:34 CreateBlastDB.pm.new > -r--r--r-- 1 root root 8532 Dec 4 08:34 FastaDumper.pm.new > -r--r--r-- 1 root root 3351 Dec 4 08:34 FBTableDumper.pm.new > -r--r--r-- 1 root root 3577 Dec 4 08:34 FilterTest.pm.new > -r--r--r-- 1 root root 4198 Dec 4 08:34 GeneFinder.pm.new > -r--r--r-- 1 root root 4938 Dec 4 08:34 OligoFinder.pm.new > -r--r--r-- 1 root root 39755 Dec 4 08:34 PrimerDesigner.pm.new > -r--r--r-- 1 root root 8310 Dec 4 08:34 ProteinDumper.pm.new > -r--r--r-- 1 root root 3364 Dec 4 08:34 RandomGene.pm.new > -r--r--r-- 1 root root 4853 Dec 4 08:34 RestrictionAnnotator.pm.new > -r--r--r-- 1 root root 8529 Dec 4 08:34 SequenceDumper.pm.new > -r--r--r-- 1 root root 2722 Dec 4 08:34 SimpleTrackFinder.pm.new > -r--r--r-- 1 root root 2497 Dec 4 08:34 SinWave.pm.new > -r--r--r-- 1 root root 4404 Dec 4 08:34 SourceTrackFinder.pm.new > -r--r--r-- 1 root root 18287 Dec 4 08:34 Spectrogram.pm.new > -r--r--r-- 1 root root 5363 Dec 4 08:34 Submitter.pm.new > -r--r--r-- 1 root root 388 Dec 4 08:34 TestFinder.pm.new > -r--r--r-- 1 root root 608 Dec 4 08:34 test.pm.new > -r--r--r-- 1 root root 6422 Dec 4 08:34 TrackDumper.pm.new > > > -- > Wes Barris <wes.barris@...> > > ------------------------------------------------------------------------------ > Return on Information: > Google Enterprise Search pays you back > Get the facts. > http://p.sf.net/sfu/google-dev2dev > _______________________________________________ > Gmod-gbrowse mailing list > Gmod-gbrowse@... > <mailto:Gmod-gbrowse@...> > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse > > > > > -- > Lincoln D. Stein > Director, Informatics and Biocomputing Platform > Ontario Institute for Cancer Research > 101 College St., Suite 800 > Toronto, ON, Canada M5G0A3 > 416 673-8514 > Assistant: Renata Musa <Renata.Musa@... > <mailto:Renata.Musa@...>> -- Wes Barris <wes.barris@...> ------------------------------------------------------------------------------ Return on Information: Google Enterprise Search pays you back Get the facts. http://p.sf.net/sfu/google-dev2dev _______________________________________________ Gmod-gbrowse mailing list Gmod-gbrowse@... https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse |
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Re: Errors while installing gbrowse2
by Scott Cain-4
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Hi Wes,
Could you try adding "--uninst 1" to the ./Build install command? That should get rid of old perl modules that might cause a problem. Scott On Tue, Dec 8, 2009 at 6:49 PM, Wes Barris <wes.barris@...> wrote: > Lincoln Stein wrote: >> Hi Wes, >> >> You may need to use --install_base to change the location of the >> libraries as well: >> >> perl Build.PL --apachemodules=/htdocs/apache-httpd/lib \ >> --cgibin=/htdocs/gbrowse2/cgi-bin \ >> --conf=/htdocs/gbrowse2/conf \ >> --htdocs=/htdocs/gbrowse2/htdocs \ >> --databases=/htdocs/gbrowse2/databases \ >> --tmp=/htdocs/gbrowse2/tmp \ >> --portdemo=8080 \ >> --installconf=n \ >> --installetc=n \ >> --wwwuser=nobody \ >> --install_base=/usr/share/gbrowse2/lib > > I just added that flag and reinstalled. However, the errors I am getting > indicate that I have to tell gbrowse where to look for the new files. > Should I go through and delete any Browser2 tree under /usr/lib/perl5 > or set an environment variable or? > > [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render.pm line 726. > [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1615. > [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 200. > [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. > [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. > [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. > [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. > [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. > [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. > [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. > [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. > [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. > [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. > [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. > [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. > [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. > [Wed Dec 09 09:42:48 2009] [error] [client 140.253.153.217] Can't locate object method "method" via package "Bio::DB::SeqFeature::Segment" at > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Karyotype.pm line 343. > > >> When you initially start, do you have a directory named /htdocs? I'm not >> sure where the chcon errors are coming from - I will need to test on an >> SELinux system. > > Yes. Before I install gbrowse2, the /htdocs/gbrowse2 directory exists. > >> The .new paths are mystifying. I will try to figure this out. >> >> Lincoln >> >> On Tue, Dec 8, 2009 at 12:15 AM, Wes Barris <wes.barris@...> wrote: >> >> I am installing gbrowse2 on a system that is currently running >> gbrowse1.71b. >> I have checked out revision 22338 of gbrowse2. This is my Build.PL >> command: >> >> perl Build.PL --apachemodules=/htdocs/apache-httpd/lib \ >> --cgibin=/htdocs/gbrowse2/cgi-bin \ >> --conf=/htdocs/gbrowse2/conf \ >> --htdocs=/htdocs/gbrowse2/htdocs \ >> --databases=/htdocs/gbrowse2/databases \ >> --tmp=/htdocs/gbrowse2/tmp \ >> --portdemo=8080 \ >> --installconf=n \ >> --installetc=n \ >> --wwwuser=nobody >> >> ./Build test succeeds. >> >> The install step has some errors: >> >> sudo ./Build install uninst=1 >> . >> . >> . >> *** SELinux detected -- fixing permissions *** >> /usr/bin/chcon: /htdocs/gbrowse2/htdocs/i: No such file or directory >> /usr/bin/chcon: failed to change context of /htdocs/gbrowse2/tmp to >> root:object_r:httpd_sys_content_rw_t: Invalid argument >> Use of uninitialized value in concatenation (.) or string at >> /usr/local/src/bioinformatics/gbrowse2/Generic-Genome-Browser/install_util/GBrowseInstall.pm >> line 419, <GEN173> line 28. >> /usr/bin/chcon: too few arguments >> Try `/usr/bin/chcon --help' for more information. >> >> ***INSTALLATION COMPLETE*** >> Load http://localhost/htdocs for demo and documentation >> >> I don't know whether the above errors are preventing the database >> directory from being created: >> >> wes@bioweb> pwd >> /htdocs/gbrowse2 >> wes@bioweb> ls -la >> total 44 >> drwxr-xr-x 6 wes root 4096 Dec 8 15:04 . >> drwxr-xr-x 20 root root 4096 Sep 28 13:33 .. >> drwxr-xr-x 2 root root 4096 Dec 8 15:04 cgi-bin >> drwxr-xr-x 6 root root 4096 Dec 8 15:04 conf >> drwxr-xr-x 6 root root 4096 Dec 8 15:04 htdocs >> drwxr-xr-x 2 nobody nobody 4096 Dec 8 15:04 tmp >> wes@bioweb> ls -l htdocs/i >> lrwxrwxrwx 1 nobody root 27 Dec 8 15:04 htdocs/i -> >> /htdocs/gbrowse2/tmp/images >> wes@bioweb> ls -dZ tmp >> drwxr-xr-x nobody nobody root:object_r:file_t tmp >> wes@bioweb> >> >> Many of the config files have a '.new' extension: >> >> wes@bioweb> ls -l conf >> total 124 >> -r--r--r-- 1 root root 1636 Dec 4 08:34 detail_select_menu.conf >> -r--r--r-- 1 root root 2711 Dec 4 08:34 enzymes.txt >> -r--r--r-- 1 root root 4305 Dec 4 08:34 GBrowse.conf >> drwxr-xr-x 2 root root 4096 Dec 8 15:04 languages >> -r--r--r-- 1 root root 1398 Dec 4 08:34 log4perl.conf >> drwxr-xr-x 2 root root 4096 Dec 8 15:04 MobyServices >> drwxr-xr-x 2 root root 4096 Dec 8 15:04 plugins >> -r--r--r-- 1 root root 3285 Dec 4 08:34 pop_demo.conf >> -r--r--r-- 1 root root 304 Dec 4 08:34 slave_preload.conf.new >> -r--r--r-- 1 root root 1822 Dec 4 08:34 submitter_plugin.conf >> drwxr-xr-x 2 root root 4096 Dec 8 15:04 themes >> -r--r--r-- 1 root root 7099 Dec 4 08:34 yeast_chr1+2.conf.new >> -r--r--r-- 1 root root 7165 Dec 4 08:34 yeast_renderfarm.conf.new >> -r--r--r-- 1 root root 3854 Dec 4 08:34 yeast_simple.conf.new >> >> Same problem with the plugins directory: >> >> wes@bioweb> ls -l conf/plugins >> total 336 >> -r--r--r-- 1 root root 13442 Dec 4 08:34 Aligner.pm.new >> -r--r--r-- 1 root root 7680 Dec 4 08:34 AlignTwoSequences.pm.new >> -r--r--r-- 1 root root 5208 Dec 4 08:34 AttributeHiliter.pm.new >> -r--r--r-- 1 root root 9593 Dec 4 08:34 BatchDumper.pm.new >> -r--r--r-- 1 root root 5608 Dec 4 08:34 Blat.pm.new >> -r--r--r-- 1 root root 6828 Dec 4 08:34 CMapDumper.pm.new >> -r--r--r-- 1 root root 3678 Dec 4 08:34 CreateBlastDB.pm.new >> -r--r--r-- 1 root root 8532 Dec 4 08:34 FastaDumper.pm.new >> -r--r--r-- 1 root root 3351 Dec 4 08:34 FBTableDumper.pm.new >> -r--r--r-- 1 root root 3577 Dec 4 08:34 FilterTest.pm.new >> -r--r--r-- 1 root root 4198 Dec 4 08:34 GeneFinder.pm.new >> -r--r--r-- 1 root root 4938 Dec 4 08:34 OligoFinder.pm.new >> -r--r--r-- 1 root root 39755 Dec 4 08:34 PrimerDesigner.pm.new >> -r--r--r-- 1 root root 8310 Dec 4 08:34 ProteinDumper.pm.new >> -r--r--r-- 1 root root 3364 Dec 4 08:34 RandomGene.pm.new >> -r--r--r-- 1 root root 4853 Dec 4 08:34 RestrictionAnnotator.pm.new >> -r--r--r-- 1 root root 8529 Dec 4 08:34 SequenceDumper.pm.new >> -r--r--r-- 1 root root 2722 Dec 4 08:34 SimpleTrackFinder.pm.new >> -r--r--r-- 1 root root 2497 Dec 4 08:34 SinWave.pm.new >> -r--r--r-- 1 root root 4404 Dec 4 08:34 SourceTrackFinder.pm.new >> -r--r--r-- 1 root root 18287 Dec 4 08:34 Spectrogram.pm.new >> -r--r--r-- 1 root root 5363 Dec 4 08:34 Submitter.pm.new >> -r--r--r-- 1 root root 388 Dec 4 08:34 TestFinder.pm.new >> -r--r--r-- 1 root root 608 Dec 4 08:34 test.pm.new >> -r--r--r-- 1 root root 6422 Dec 4 08:34 TrackDumper.pm.new >> >> >> -- >> Wes Barris <wes.barris@...> >> >> ------------------------------------------------------------------------------ >> Return on Information: >> Google Enterprise Search pays you back >> Get the facts. >> http://p.sf.net/sfu/google-dev2dev >> _______________________________________________ >> Gmod-gbrowse mailing list >> Gmod-gbrowse@... >> <mailto:Gmod-gbrowse@...> >> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse >> >> >> >> >> -- >> Lincoln D. Stein >> Director, Informatics and Biocomputing Platform >> Ontario Institute for Cancer Research >> 101 College St., Suite 800 >> Toronto, ON, Canada M5G0A3 >> 416 673-8514 >> Assistant: Renata Musa <Renata.Musa@... >> <mailto:Renata.Musa@...>> > > > -- > Wes Barris <wes.barris@...> > > ------------------------------------------------------------------------------ > Return on Information: > Google Enterprise Search pays you back > Get the facts. > http://p.sf.net/sfu/google-dev2dev > _______________________________________________ > Gmod-gbrowse mailing list > Gmod-gbrowse@... > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse > -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research ------------------------------------------------------------------------------ Return on Information: Google Enterprise Search pays you back Get the facts. http://p.sf.net/sfu/google-dev2dev _______________________________________________ Gmod-gbrowse mailing list Gmod-gbrowse@... https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse |
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Re: Errors while installing gbrowse2
by Wes Barris
::
Rate this Message:
Scott Cain wrote:
> Hi Wes, > > Could you try adding "--uninst 1" to the ./Build install command? > That should get rid of old perl modules that might cause a problem. Yes, I already have cpan configured to use that. I also add that option whenever manually installing. > Scott > > > On Tue, Dec 8, 2009 at 6:49 PM, Wes Barris <wes.barris@...> wrote: >> Lincoln Stein wrote: >>> Hi Wes, >>> >>> You may need to use --install_base to change the location of the >>> libraries as well: >>> >>> perl Build.PL --apachemodules=/htdocs/apache-httpd/lib \ >>> --cgibin=/htdocs/gbrowse2/cgi-bin \ >>> --conf=/htdocs/gbrowse2/conf \ >>> --htdocs=/htdocs/gbrowse2/htdocs \ >>> --databases=/htdocs/gbrowse2/databases \ >>> --tmp=/htdocs/gbrowse2/tmp \ >>> --portdemo=8080 \ >>> --installconf=n \ >>> --installetc=n \ >>> --wwwuser=nobody \ >>> --install_base=/usr/share/gbrowse2/lib >> I just added that flag and reinstalled. However, the errors I am getting >> indicate that I have to tell gbrowse where to look for the new files. >> Should I go through and delete any Browser2 tree under /usr/lib/perl5 >> or set an environment variable or? >> >> [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at >> /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render.pm line 726. >> [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at >> /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1615. >> [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at >> /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 200. >> [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at >> /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. >> [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at >> /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. >> [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at >> /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. >> [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at >> /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. >> [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at >> /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. >> [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at >> /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. >> [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at >> /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. >> [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at >> /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. >> [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at >> /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. >> [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at >> /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. >> [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at >> /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. >> [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at >> /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. >> [Wed Dec 09 09:42:47 2009] [error] [client 140.253.153.217] Use of uninitialized value in concatenation (.) or string at >> /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 1888. >> [Wed Dec 09 09:42:48 2009] [error] [client 140.253.153.217] Can't locate object method "method" via package "Bio::DB::SeqFeature::Segment" at >> /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/Bio/Graphics/Karyotype.pm line 343. >> >> >>> When you initially start, do you have a directory named /htdocs? I'm not >>> sure where the chcon errors are coming from - I will need to test on an >>> SELinux system. >> Yes. Before I install gbrowse2, the /htdocs/gbrowse2 directory exists. >> >>> The .new paths are mystifying. I will try to figure this out. >>> >>> Lincoln >>> >>> On Tue, Dec 8, 2009 at 12:15 AM, Wes Barris <wes.barris@...> wrote: >>> >>> I am installing gbrowse2 on a system that is currently running >>> gbrowse1.71b. >>> I have checked out revision 22338 of gbrowse2. This is my Build.PL >>> command: >>> >>> perl Build.PL --apachemodules=/htdocs/apache-httpd/lib \ >>> --cgibin=/htdocs/gbrowse2/cgi-bin \ >>> --conf=/htdocs/gbrowse2/conf \ >>> --htdocs=/htdocs/gbrowse2/htdocs \ >>> --databases=/htdocs/gbrowse2/databases \ >>> --tmp=/htdocs/gbrowse2/tmp \ >>> --portdemo=8080 \ >>> --installconf=n \ >>> --installetc=n \ >>> --wwwuser=nobody >>> >>> ./Build test succeeds. >>> >>> The install step has some errors: >>> >>> sudo ./Build install uninst=1 >>> . >>> . >>> . >>> *** SELinux detected -- fixing permissions *** >>> /usr/bin/chcon: /htdocs/gbrowse2/htdocs/i: No such file or directory >>> /usr/bin/chcon: failed to change context of /htdocs/gbrowse2/tmp to >>> root:object_r:httpd_sys_content_rw_t: Invalid argument >>> Use of uninitialized value in concatenation (.) or string at >>> /usr/local/src/bioinformatics/gbrowse2/Generic-Genome-Browser/install_util/GBrowseInstall.pm >>> line 419, <GEN173> line 28. >>> /usr/bin/chcon: too few arguments >>> Try `/usr/bin/chcon --help' for more information. >>> >>> ***INSTALLATION COMPLETE*** >>> Load http://localhost/htdocs for demo and documentation >>> >>> I don't know whether the above errors are preventing the database >>> directory from being created: >>> >>> wes@bioweb> pwd >>> /htdocs/gbrowse2 >>> wes@bioweb> ls -la >>> total 44 >>> drwxr-xr-x 6 wes root 4096 Dec 8 15:04 . >>> drwxr-xr-x 20 root root 4096 Sep 28 13:33 .. >>> drwxr-xr-x 2 root root 4096 Dec 8 15:04 cgi-bin >>> drwxr-xr-x 6 root root 4096 Dec 8 15:04 conf >>> drwxr-xr-x 6 root root 4096 Dec 8 15:04 htdocs >>> drwxr-xr-x 2 nobody nobody 4096 Dec 8 15:04 tmp >>> wes@bioweb> ls -l htdocs/i >>> lrwxrwxrwx 1 nobody root 27 Dec 8 15:04 htdocs/i -> >>> /htdocs/gbrowse2/tmp/images >>> wes@bioweb> ls -dZ tmp >>> drwxr-xr-x nobody nobody root:object_r:file_t tmp >>> wes@bioweb> >>> >>> Many of the config files have a '.new' extension: >>> >>> wes@bioweb> ls -l conf >>> total 124 >>> -r--r--r-- 1 root root 1636 Dec 4 08:34 detail_select_menu.conf >>> -r--r--r-- 1 root root 2711 Dec 4 08:34 enzymes.txt >>> -r--r--r-- 1 root root 4305 Dec 4 08:34 GBrowse.conf >>> drwxr-xr-x 2 root root 4096 Dec 8 15:04 languages >>> -r--r--r-- 1 root root 1398 Dec 4 08:34 log4perl.conf >>> drwxr-xr-x 2 root root 4096 Dec 8 15:04 MobyServices >>> drwxr-xr-x 2 root root 4096 Dec 8 15:04 plugins >>> -r--r--r-- 1 root root 3285 Dec 4 08:34 pop_demo.conf >>> -r--r--r-- 1 root root 304 Dec 4 08:34 slave_preload.conf.new >>> -r--r--r-- 1 root root 1822 Dec 4 08:34 submitter_plugin.conf >>> drwxr-xr-x 2 root root 4096 Dec 8 15:04 themes >>> -r--r--r-- 1 root root 7099 Dec 4 08:34 yeast_chr1+2.conf.new >>> -r--r--r-- 1 root root 7165 Dec 4 08:34 yeast_renderfarm.conf.new >>> -r--r--r-- 1 root root 3854 Dec 4 08:34 yeast_simple.conf.new >>> >>> Same problem with the plugins directory: >>> >>> wes@bioweb> ls -l conf/plugins >>> total 336 >>> -r--r--r-- 1 root root 13442 Dec 4 08:34 Aligner.pm.new >>> -r--r--r-- 1 root root 7680 Dec 4 08:34 AlignTwoSequences.pm.new >>> -r--r--r-- 1 root root 5208 Dec 4 08:34 AttributeHiliter.pm.new >>> -r--r--r-- 1 root root 9593 Dec 4 08:34 BatchDumper.pm.new >>> -r--r--r-- 1 root root 5608 Dec 4 08:34 Blat.pm.new >>> -r--r--r-- 1 root root 6828 Dec 4 08:34 CMapDumper.pm.new >>> -r--r--r-- 1 root root 3678 Dec 4 08:34 CreateBlastDB.pm.new >>> -r--r--r-- 1 root root 8532 Dec 4 08:34 FastaDumper.pm.new >>> -r--r--r-- 1 root root 3351 Dec 4 08:34 FBTableDumper.pm.new >>> -r--r--r-- 1 root root 3577 Dec 4 08:34 FilterTest.pm.new >>> -r--r--r-- 1 root root 4198 Dec 4 08:34 GeneFinder.pm.new >>> -r--r--r-- 1 root root 4938 Dec 4 08:34 OligoFinder.pm.new >>> -r--r--r-- 1 root root 39755 Dec 4 08:34 PrimerDesigner.pm.new >>> -r--r--r-- 1 root root 8310 Dec 4 08:34 ProteinDumper.pm.new >>> -r--r--r-- 1 root root 3364 Dec 4 08:34 RandomGene.pm.new >>> -r--r--r-- 1 root root 4853 Dec 4 08:34 RestrictionAnnotator.pm.new >>> -r--r--r-- 1 root root 8529 Dec 4 08:34 SequenceDumper.pm.new >>> -r--r--r-- 1 root root 2722 Dec 4 08:34 SimpleTrackFinder.pm.new >>> -r--r--r-- 1 root root 2497 Dec 4 08:34 SinWave.pm.new >>> -r--r--r-- 1 root root 4404 Dec 4 08:34 SourceTrackFinder.pm.new >>> -r--r--r-- 1 root root 18287 Dec 4 08:34 Spectrogram.pm.new >>> -r--r--r-- 1 root root 5363 Dec 4 08:34 Submitter.pm.new >>> -r--r--r-- 1 root root 388 Dec 4 08:34 TestFinder.pm.new >>> -r--r--r-- 1 root root 608 Dec 4 08:34 test.pm.new >>> -r--r--r-- 1 root root 6422 Dec 4 08:34 TrackDumper.pm.new >>> >>> >>> -- >>> Wes Barris <wes.barris@...> >>> >>> ------------------------------------------------------------------------------ >>> Return on Information: >>> Google Enterprise Search pays you back >>> Get the facts. >>> http://p.sf.net/sfu/google-dev2dev >>> _______________________________________________ >>> Gmod-gbrowse mailing list >>> Gmod-gbrowse@... >>> <mailto:Gmod-gbrowse@...> >>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse >>> >>> >>> >>> >>> -- >>> Lincoln D. Stein >>> Director, Informatics and Biocomputing Platform >>> Ontario Institute for Cancer Research >>> 101 College St., Suite 800 >>> Toronto, ON, Canada M5G0A3 >>> 416 673-8514 >>> Assistant: Renata Musa <Renata.Musa@... >>> <mailto:Renata.Musa@...>> >> >> -- >> Wes Barris <wes.barris@...> >> >> ------------------------------------------------------------------------------ >> Return on Information: >> Google Enterprise Search pays you back >> Get the facts. >> http://p.sf.net/sfu/google-dev2dev >> _______________________________________________ >> Gmod-gbrowse mailing list >> Gmod-gbrowse@... >> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse >> > > > > -- > ------------------------------------------------------------------------ > Scott Cain, Ph. D. scott at scottcain dot net > GMOD Coordinator (http://gmod.org/) 216-392-3087 > Ontario Institute for Cancer Research -- Wes Barris <wes.barris@...> ------------------------------------------------------------------------------ Return on Information: Google Enterprise Search pays you back Get the facts. http://p.sf.net/sfu/google-dev2dev _______________________________________________ Gmod-gbrowse mailing list Gmod-gbrowse@... https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse |
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