Export as HTML

[Ulrik Stervbo-2]

Hi List,

I am all new to bioperl :-D

I have several annotated sequences as sequence objects I would like to print
to a HTML file, so that the annotation is highlighted with some colours. For
each sequence I would also like to include a short legend describing the
colours.

Do I have to do this by hand or is there a module that can help me?

Ultimately I need to copy the colourful sequences into a word-document, is
there a better way that go via html?

Best and thanks for any help and suggestions
Ulrik
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[bunny2lemon]

Hi,

Data::Table [1] might be pretty handy.

Spiros

[1] http://search.cpan.org/perldoc?Data::Table

On Sun, Oct 25, 2009 at 3:42 PM, Ulrik Stervbo <ulrik.stervbo@...> wrote:

> Hi List,
>
> I am all new to bioperl :-D
>
> I have several annotated sequences as sequence objects I would like to print
> to a HTML file, so that the annotation is highlighted with some colours. For
> each sequence I would also like to include a short legend describing the
> colours.
>
> Do I have to do this by hand or is there a module that can help me?
>
> Ultimately I need to copy the colourful sequences into a word-document, is
> there a better way that go via html?
>
> Best and thanks for any help and suggestions
> Ulrik
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l@...
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>

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[Ulrik Stervbo-2]

Hi,

Thanks - but I do not want is as a table. I would like something like:
Test1
Gene1
Mismatch
>test1
GTGCTGGGATTCTGTaaGTGCAGATTTGCTGGGTGAGCGGAG

Test2
Gene2
>test2
GTGCTGGGATTCTGTaaGTGCAGATTTGCTGGGTGAGCGGAG

as HTML so it is easy to paste into the word document

Ulrik

2009/10/25 Spiros Denaxas <s.denaxas@...>

> Hi,
>
> Data::Table [1] might be pretty handy.
>
> Spiros
>
> [1] http://search.cpan.org/perldoc?Data::Table
>
> On Sun, Oct 25, 2009 at 3:42 PM, Ulrik Stervbo <ulrik.stervbo@...>
> wrote:
> > Hi List,
> >
> > I am all new to bioperl :-D
> >
> > I have several annotated sequences as sequence objects I would like to
> print
> > to a HTML file, so that the annotation is highlighted with some colours.
> For
> > each sequence I would also like to include a short legend describing the
> > colours.
> >
> > Do I have to do this by hand or is there a module that can help me?
> >
> > Ultimately I need to copy the colourful sequences into a word-document,
> is
> > there a better way that go via html?
> >
> > Best and thanks for any help and suggestions
> > Ulrik
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l@...
> > http://lists.open-bio.org/mailman/listinfo/bioperl-l
> >
>

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