ij-VTK Lurkers,
Thanks to Jarek for finessing my "proof of concept" RGB
VtkEncoder/VtkDecoder contribution
into a form more robust.
I've been tryin' to get full color volume rendering working under ij-VTK.
I tried posting to the VTK users mailing list, but received NO response.
Although, full color volume rendering in VTK seems unintegrated,
I was led to the "vtkFixedPointVolumeRayCastMapper" class by some older
posts.
This class supposedly supports color volume rendering, but appears to cause
JVM crashes.
I will probably try VTK's lone "vtkFixedPointVolumeRayCastMapper" test
example next (maybe under TCL)
e.-
===
----- Original Message -----
From: <
ij-plugins-users-request@...>
To: <
ij-plugins-users@...>
Sent: Wednesday, September 27, 2006 5:41 PM
Subject: Ij-plugins-users Digest, Vol 3, Issue 5
> Send Ij-plugins-users mailing list submissions to
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> Today's Topics:
>
> 1. Serializing/deserializing VTK classes (shu gao)
> 2. Re: ij-VTK Server Timeout (keesh)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Wed, 27 Sep 2006 17:11:20 +0000
> From: "shu gao" <
gshu418@...>
> Subject: [Ij-plugins-users] Serializing/deserializing VTK classes
> To:
ij-plugins-users@...
> Message-ID: <
BAY107-F212DA44C9EE1A838EEB9B3FB1A0@...>
> Content-Type: text/plain; format=flowed
>
> Dear all,
> I am developing web service using VTK. I met some difficulties in
> serializing /deserialing VTK objects. As an example,I modified
Medical1.java
> ,which is in the VTK-Examples,as a application in server side.So the
return
> of the web service is class Medical1.I got an
> Exception--java.io.NotserializableException:vtk.vtkLight.And I also found
> the other classes,such as vtkVolume16Reader,vtkContourFilter, and so on,
all
> seem not to be serialized.How do I
> serialize /deserialze VTK objects? Any suggestion would be helpful and
many
> thanks in advance.
>
> Kind regards,
> Gao Shu
>
>
>
>
> >From: "keesh" <
keesh@...>
> >To: <
ij-plugins-users@...>
> >Subject: [Ij-plugins-users] Full Color Volume Rendering?
> >Date: Sun, 24 Sep 2006 17:17:17 -0500
> >
> >Jarek,
> >
> >I want to experiment with full color (RGB) volume rendering in ij-VTK.
> >As I started to modify/test the source code, I ran into an exception in
> >VtkEncoder
> >(does not support RGB).
> >I do not seem to have the source code for this "io" package?
> >Would it be difficult to add support for RGB images into VtkEncoder?
> >I already made up a simple RGB test stack in Image/J and I'm motivated
> >to add RGB support into ij-VTK.
> >
> >note to self
> >---
> >Try a late-based vtkImageData::GetNumberofScalarComponents test.
> >Try either applying no color transder function or a linear one on each
> >channel.
> >
> >******************************************
> >keesh
> >Software Development Engineer
> >(Alchemist of the Millennium)
> >
> >Contact:
> >
keesh@...
> >******************************************
> >
> >Work Life Plan:
> >To improve the quality of life for all mankind through better pattern
> >recognition techniques.
> >
> >Home Life Plan:
> >Married, but happy. Three bright beacons light my way.
>
>
> >-------------------------------------------------------------------------
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> >_______________________________________________
> >Ij-plugins-users mailing list
> >
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> >
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> _________________________________________________________________
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>
>
> ------------------------------
>
> Message: 2
> Date: Wed, 27 Sep 2006 15:24:55 -0500
> From: "keesh" <
keesh@...>
> Subject: Re: [Ij-plugins-users] ij-VTK Server Timeout
> To: "Jarek Sacha" <
jsacha@...>
> Cc:
Maximilian.Loy@...,
ij-plugins-users@...,
>
heiko.gleitsmann@...,
farrokhi@...
> Message-ID: <003a01c6e272$ffd4c0c0$6401a8c0@keeshhomedesk3>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Jarek,
>
> Regarding CVS, nothing has changed on my end either.
> Its been so long that I don't recall how I pulled down the initial ij-VTK
> module?
>
> When did the CVS server change to ij-plugins.cvs.sourceforge.net from
> cvs.sourceforge.net
> (was there an e-mail sent out)?
>
> Do I have both update and checkin permissions on the main ij-plugins
> (toolkit) module?
> e.-
> ===
>
>
> ----- Original Message -----
> From: "Jarek Sacha" <
jsacha@...>
> To: "keesh" <
keesh@...>
> Cc: <
ij-plugins-users@...>; <
Maximilian.Loy@...>;
> <
heiko.gleitsmann@...>; <
farrokhi@...>
> Sent: Sunday, September 24, 2006 10:19 PM
> Subject: Re: [Ij-plugins-users] ij-VTK Server Timeout
>
>
> > I a bit confused as to you error message, not sure where it start and
> > where ends.
> >
> > Part of it looks normal (lines c to m and very beginning of n - server
> > ssh key is not in you cache).
> >
> > I am have no idea where the error from line a is coming from, as looks
> > as if some security flags are not set right. I did not change anything
> > for years.
> >
> > Line b may be the key, it looks as if you are trying to create a new
> > 'ij-VTK' module in the repository. This is sure to fail as the module
> > already exists. Other errors may be just a consequence of this one. You
> > may be issuing a wrong CVS command.
> >
> > Jarek
> >
> > keesh wrote:
> > > Jarek,
> > >
> > > I performed a basic test with RSA auth. via SSH which still appears to
> work
> > > fine.
> > >
> > > When I performed a simple text file checkin on a clean new project
dir.
> I
> > > got the following error.
> > > What else has changed besides "ij-plugins.cvs.sourceforge.net"
> > > as my previous CVS setup was working fine? Do I need new permissions
> for
> > > ij-VTK?
> > > a.. Failed to checkout CVSROOT/cvswrappers. Permission to checkout
> this
> > > file is necessary to configure CVS to recognize certain binary file
> types.
> > > b.. Failed to create the module "ij-VTK" in the CVS repository. CVS
> > > returned the following error:
> > > c.. The servers host key is not cached in the registry. You
> > > d.. have no guarantee that the server is the computer you
> > > e.. think it is.
> > > f.. The servers rsa2 key fingerprint is:
> > > g.. ssh-rsa 1024 13:f1:65:c3:6c:b7:7e:a5:f0:f3:f5:19:f4:42:9c:4a
> > > h.. If you trust this host, enter "y" to add the key to
> > > i.. PuTTYs cache and carry on connecting.
> > > j.. If you want to carry on connecting just once, without
> > > k.. adding the key to the cache, enter "n".
> > > l.. If you do not trust this host, press Return to abandon the
> > > m.. connection.
> > > n.. Store key in cache? (y/n) unrecognized request `responses ok
error
> > > Valid-requests Checked-in New-entry Checksum Copy-file Updated Created
> > > Update-existing Merged Patched Rcs-diff Mode Mod-time Removed
> Remove-entry
> > > Set-static-directory Clear-static-directory Set-sticky Clear-sticky
> Template
> > > Notified Module-expansion Wrapper-rcsOption M Mbinary E F MT
> > > Do the following values look OK to you?
> > >
> > >>> team.ActiveVCS[0]=CVS
> > >>> team.CvsAccessMethod[0]=ext
> > >>> team.CvsBranch[0]=<main>
> > >>> team.CvsModule[0]=ij-VTK
> > >>>
> > >>>
> > >
> team.CvsRemoteShell[0]=J:\Borland\JBuilder2005\thirdparty\putty\plink.exe
> > >
> > >>> team.CvsRepository[0]=/cvsroot/ij-plugins
> > >>> team.CvsServer[0]=ij-plugins.cvs.sourceforge.net
> > >>> team.CvsUsername[0]=keesh0
> > >>>
> > >
> > > e.-
> > > ===
> > >
> > > ----- Original Message -----
> > > From: "Jarek Sacha" <
jsacha@...>
> > > To: "keesh" <
keesh@...>
> > > Cc: <
ij-plugins-users@...>;
> <
Maximilian.Loy@...>;
> > > "Farrokhi, Shawn" <
farrokhi@...>;
<
heiko.gleitsmann@...>
> > > Sent: Sunday, September 17, 2006 9:45 PM
> > > Subject: Re: [Ij-plugins-users] ij-VTK Server Timeout
> > >
> > >
> > >
> > >> Keesh:
> > >>
> > >> I am not familiar it JBuilder setup. Did you try some other CVS
client?
> > >> Tested again to make sure with SmartCVS, IDEA, and NetBeans, I have
no
> > >> problem accessing ij-plugins CVS.
> > >> Did you try to check out the project in a new directory to make sure
> > >> that you existing setup did not get corrupted? Can you access other
> > >> projects' CVS on SourceForge?
> > >>
> > >> Jarek
> > >>
> > >> keesh wrote:
> > >>
> > >>> Jarek,
> > >>>
> > >>> Here are my updated Borland CVS settings...
> > >>> team.ActiveVCS[0]=CVS
> > >>>
> > >>> team.CvsAccessMethod[0]=ext
> > >>>
> > >>> team.CvsAutosaveEnabled[0]=1
> > >>>
> > >>> team.CvsBranch[0]=<main>
> > >>>
> > >>> team.CvsModule[0]=ij-VTK
> > >>>
> > >>> team.CvsPruneEmptyDirs[0]=1
> > >>>
> > >>>
> > >>>
> > >
> team.CvsRemoteShell[0]=J:\Borland\JBuilder2005\thirdparty\putty\plink.exe
> > >
> > >>> team.CvsRepository[0]=/cvsroot/ij-plugins
> > >>>
> > >>> team.CvsServer[0]=ij-plugins.cvs.sourceforge.net
> > >>>
> > >>> team.CvsShowConsole[0]=1
> > >>>
> > >>> team.CvsUsername[0]=keesh0
> > >>>
> > >>> team.lastScanned[0]=1158527699298
> > >>>
> > >>>
> > >>>
> > >
>
team.prunedDirectories[0]=src/cxx;src/java/net/sf/ij_plugins/utils;src/java/
> > >
> > >
>
net/sf/ij_plugins/vtk/prototype/surfacerender;src/java/net/sf/ij_plugins/vtk
> > >
> > >>> /prototype/volumerender
> > >>>
> > >>> Any ideas why CVS still appears to be broken?
> > >>> e.-
> > >>> ===
> > >>>
> > >>> ----- Original Message -----
> > >>> From: "keesh" <
keesh@...>
> > >>> To: "keesh" <
keesh@...>
> > >>> Sent: Monday, September 11, 2006 8:13 PM
> > >>> Subject: Fw: [Ij-plugins-users] ij-VTK Server Timeout
> > >>>
> > >>>
> > >>>
> > >>>
> > >>>> Developer CVS Access via SSH
> > >>>>
> > >>>> Only project developers can access the CVS tree via this method. A
> SSH
> > >>>> client must be installed on your client machine. Substitute
> modulename
> > >>>>
> > > and
> > >
> > >>>> developername with the proper values. Enter your site password when
> > >>>> prompted.
> > >>>>
> > >>>> Project administrators may limit CVS access to this repository
using
> > >>>> cvs_acls or the CVS access member permissions option. Developers
may
> > >>>>
> > >>>>
> > >>> verify
> > >>>
> > >>>
> > >>>> their CVS access status on the admin page for this project.
> > >>>>
> > >>>> A significant amount of information about project CVS services may
be
> > >>>>
> > >>>>
> > >>> found
> > >>>
> > >>>
> > >>>> in our "CVS (Version Control for Source Code)".
> > >>>>
> > >>>> Developers may also make use of shared SSH keys for authentication.
> > >>>>
> > >>>> export CVS_RSH=ssh
> > >>>>
> > >>>>
> > >>>>
> > >>>>
> > >
>
cvs -z3 -d:ext:
developername@...:/cvsroot/ij-plug
> > >
> > >>>> ins co -P modulename
> > >>>>
> > >>>> NOTE: UNIX file and directory names are case sensitive. The path to
> the
> > >>>> project CVSROOT must be specified using lowercase characters (i.e.
> > >>>> /cvsroot/ij-plugins)
> > >>>>
> > >>>> ----- Original Message -----
> > >>>> From: "Jarek Sacha" <
jarek@...>
> > >>>> To: "keesh" <
keesh@...>
> > >>>> Cc: <
ij-plugins-users@...>;
> > >>>>
> > > <
Maximilian.Loy@...>;
> > >
> > >>>> "Farrokhi, Shawn" <
farrokhi@...>;
> <
heiko.gleitsmann@...>
> > >>>> Sent: Sunday, September 10, 2006 9:38 PM
> > >>>> Subject: Re: [Ij-plugins-users] ij-VTK Server Timeout
> > >>>>
> > >>>>
> > >>>>
> > >>>>
> > >>>>> keesh wrote:
> > >>>>>
> > >>>>>
> > >>>>>> But, I was unable to pull down the latest ij-VTK source code from
> > >>>>>> Sourceforge
> > >>>>>> using CVS (timeout errors).
> > >>>>>> Have any repository paths changed?
> > >>>>>>
> > >>>>>>
> > >>>>> SourceForge was doing some changes to CVS servers over past
months.
> I
> > >>>>>
> > > am
> > >
> > >>>>> not sure what and when changed, I updated my setup a while ago.
CVS
> > >>>>>
> > > info
> > >
> > >>>>> at project page:
> > >>>>>
http://sourceforge.net/cvs/?group_id=44711> > >>>>> has correct CVS configuration information (as far as I can tell).
> > >>>>>
> > >>>>> Jarek
> > >>>>>
> > >>>>>
> > >>>>>
> > >>>>>
> > >>>>
> > >>>
> > >>>
> > >>>
> > >>>
> > >>
> > >>
> > >
> > >
> > >
> >
>
> -------------------------------------------------------------------------
> > > Take Surveys. Earn Cash. Influence the Future of IT
> > > Join SourceForge.net's Techsay panel and you'll get the chance to
share
> your
> > > opinions on IT & business topics through brief surveys -- and earn
cash
your
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