GBrowse config file include
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GBrowse config file include
by Geoff Winsor
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Hi,
I use GBrowse for about a dozen strains of bacteria - each in a separate database with a separate configuration file. Since most of the tracks are the same between databases, I would like to keep the configuration of the common tracks in a single file that I could call from each individual .conf file. I was wondering if there is a specific key/value pair that I could use to specify this type of an include. Thanks, Geoff -- Geoff Winsor Lead Database Developer, Bioinformatics Brinkman Lab IRMACS Centre, Room 10920 Simon Fraser University, Burnaby, BC, Canada, V5A 1S6 ------------------------------------------------------------------------------ Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july _______________________________________________ Gmod-gbrowse mailing list Gmod-gbrowse@... https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse |
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Re: GBrowse config file include
by Scott Cain-4
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Hi Geoff,
While it doesn't appear to be documented particularly well, the GBrowse config parser supports include files. The syntax is fairly simple: #include <filepath> where the file path can definitely be a relative path, and I think absolute paths should work as well. Scott On Nov 3, 2009, at 8:14 PM, Geoff Winsor wrote: > Hi, > I use GBrowse for about a dozen strains of bacteria - each in a > separate > database with a separate configuration file. Since most of the tracks > are the same between databases, I would like to keep the configuration > of the common tracks in a single file that I could call from each > individual .conf file. I was wondering if there is a specific key/ > value > pair that I could use to specify this type of an include. > Thanks, > Geoff > > -- > Geoff Winsor > Lead Database Developer, Bioinformatics > Brinkman Lab > IRMACS Centre, Room 10920 > Simon Fraser University, Burnaby, BC, Canada, V5A 1S6 > > > > ------------------------------------------------------------------------------ > Let Crystal Reports handle the reporting - Free Crystal Reports 2008 > 30-Day > trial. Simplify your report design, integration and deployment - and > focus on > what you do best, core application coding. Discover what's new with > Crystal Reports now. http://p.sf.net/sfu/bobj-july > _______________________________________________ > Gmod-gbrowse mailing list > Gmod-gbrowse@... > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse ----------------------------------------------------------------------- Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research ------------------------------------------------------------------------------ Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july _______________________________________________ Gmod-gbrowse mailing list Gmod-gbrowse@... https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse |
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Re: GBrowse config file include
by Scott Cain-4
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Hi Lacey,
As far as I can recall, the name of the file doesn't matter, although you definitely should not use .conf, as GBrowse would then think it is a full conf file and try to treat it as such. As for placement, it should go wherever the contents of the file should go: if the file has track definitions, it should go in the tracks section. The syntax is to place a # mark in the first column, like this: #include TC.tracks Scott On Tue, Nov 10, 2009 at 12:16 PM, Lacey Sanderson <las166@...> wrote: > I was actually looking to do a similar thing... However I can't find > this in the configuration documentation and when I tried to implement > it myself I couldn't get it to work. > > I want to have separate file containing different parts of my track > definitions and then include them in the main conf file. > > What I did was move the track definitions into a file named TC.tracks > and then in the same spot as the track definitions were added the > include TC.tracks > line. The TC.tracks file is in the same directory as the main .conf. > > Where should the include be located? ie: track definitions, general, > somewhere else... > Does the extension on the filename matter? ie: .tracks instead of .conf > > If someone could help me with this it or even point me to the > documentation it would be much appreciated... > > System: Intrepid Ubuntu > Gbrowse v 1.70 > > Lacey > > ------------------------------------------------------------------------------ > Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day > trial. Simplify your report design, integration and deployment - and focus on > what you do best, core application coding. Discover what's new with > Crystal Reports now. http://p.sf.net/sfu/bobj-july > _______________________________________________ > Gmod-gbrowse mailing list > Gmod-gbrowse@... > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse > -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research ------------------------------------------------------------------------------ Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july _______________________________________________ Gmod-gbrowse mailing list Gmod-gbrowse@... https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse |
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