GBrowse for Viral genomes
|
View:
New views
3 Messages
—
Rating Filter:
Alert me
|
 |
GBrowse for Viral genomes
by jo sequeira
::
Rate this Message:
------------------------------------------------------------------------------ Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT is a gathering of tech-side developers & brand creativity professionals. Meet the minds behind Google Creative Lab, Visual Complexity, Processing, & iPhoneDevCamp as they present alongside digital heavyweights like Barbarian Group, R/GA, & Big Spaceship. http://p.sf.net/sfu/creativitycat-com _______________________________________________ Gmod-gbrowse mailing list Gmod-gbrowse@... https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse |
|
|
|
Re: GBrowse for Viral genomes
by Dave Clements, GMOD Help Desk
::
Rate this Message:
Hi Jo,
I don't have enough knowledge of viral genomics to fully understand your question, but I think I get the gist of it. GBrowse can display anything from high quality reference genomes to unmapped EST collections. What changes between the two is how you search for the data. If you have 20 well defined chromosomes, you can have a pull-down listing all chromosomes. If you have 10,000 ESTs a pull down won't work and you have to access the data via name searching, BLAST, or from external links (e.g., an EST page). I'm guessing that viral sequences are more like the EST case then the reference case. Hope this helps, Dave C On Mon, Jun 1, 2009 at 7:31 AM, jo sequeira <jolovesjo@...> wrote: > Is it possible to view large number of virus sequences on GBrowse. Since > viral genomes can be segmented and have fewer proteins but several > thousand's of sequences, (unlike bacterial genomes that can have thousands > of genes and fewer genomes), can GBrowse handle those numbers of viral > genomes? > Thanks > > Even the word "Impossible" says "I m Possible" and "Prayer" tagged > with"Faith" makes all things possible ! > > ------------------------------------------------------------------------------ > Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT > is a gathering of tech-side developers & brand creativity professionals. > Meet > the minds behind Google Creative Lab, Visual Complexity, Processing, & > iPhoneDevCamp as they present alongside digital heavyweights like Barbarian > Group, R/GA, & Big Spaceship. http://p.sf.net/sfu/creativitycat-com > _______________________________________________ > Gmod-gbrowse mailing list > Gmod-gbrowse@... > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse > > -- Was this helpful? Let us know at http://gmod.org/wiki/Help_Desk_Feedback Learn more about GMOD at: SMBE: http://ccg.biology.uiowa.edu/smbe/symposia.php?action=view&sym_ID=27 Arthropod Genomics: http://www.k-state.edu/agc/symp2009/seminar.html AGA Next Gen Seq in Non-Models: http://www.regonline.com/Nextgeneration ------------------------------------------------------------------------------ OpenSolaris 2009.06 is a cutting edge operating system for enterprises looking to deploy the next generation of Solaris that includes the latest innovations from Sun and the OpenSource community. Download a copy and enjoy capabilities such as Networking, Storage and Virtualization. Go to: http://p.sf.net/sfu/opensolaris-get _______________________________________________ Gmod-gbrowse mailing list Gmod-gbrowse@... https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse |
|
|
|
Re: GBrowse for Viral genomes
by Jim Hu
::
Rate this Message:
Gbrowse handles multiple chromosomes, so viral segments should work fine.
Jim On Jun 1, 2009, at 9:31 AM, jo sequeira wrote:
===================================== Jim Hu Associate Professor Dept. of Biochemistry and Biophysics 2128 TAMU Texas A&M Univ. College Station, TX 77843-2128 979-862-4054 ------------------------------------------------------------------------------ OpenSolaris 2009.06 is a cutting edge operating system for enterprises looking to deploy the next generation of Solaris that includes the latest innovations from Sun and the OpenSource community. Download a copy and enjoy capabilities such as Networking, Storage and Virtualization. Go to: http://p.sf.net/sfu/opensolaris-get _______________________________________________ Gmod-gbrowse mailing list Gmod-gbrowse@... https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse |
| Free embeddable forum powered by Nabble | Forum Help |
