GBrowse2 installed but no image from SQL data
|
View:
New views
6 Messages
—
Rating Filter:
Alert me
|
 |
GBrowse2 installed but no image from SQL data
by Liisa Koski-2
::
Rate this Message:
|
||||||||||||||||||||
|
|
Re: GBrowse2 installed but no image from SQL data
by Scott Cain-4
::
Rate this Message:
|
||||||||||||||||||||
|
|
Re: GBrowse2 installed but no image from SQL data
by Liisa Koski-2
::
Rate this Message:
|
||||||||||||||||||||
|
|
Re: GBrowse2 installed but no image from SQL data
by Scott Cain-4
::
Rate this Message:
|
||||||||||||||||||||
|
|
Re: GBrowse2 installed but no image from SQL data
by Liisa Koski-2
::
Rate this Message:
Hi Scott, Yes, here is an example: Liisa Koski Bioinformatics Programmer T: (450)358-2621 x104 DNA Landmarks Inc. 84 Richelieu St.-Jean-sur-Richelieu, J3B 6X3 Quebec, Canada liisa.koski@...
Hi Liisa, How are the reference sequence (ie, chromosomes) represented in the GFF file? Do they have both Name and ID tags? Scott On Fri, Oct 23, 2009 at 9:55 AM, Liisa Koski <liisa.koski@...> wrote: Hi Scott, There is absolutely no error in the error log. ???? Liisa
Hello Liisa, That's weird. Is there anything in the apache error_log that might help? Scott On Fri, Oct 23, 2009 at 8:41 AM, Liisa Koski <liisa.koski@...> wrote: > > Hello, > I have installed GBrowse2 and can see the supplied Data Sources (yeast) no > problem. I loaded my own data into an SQL database using > Bio::SeqFeature::Store. When I switch to my new Data Source I can enter > search terms and the browser does find them (as displayed by the coordinates > at the top of the page), but I have no image displayed in the browser. > Overview or Detailed view. Can anyone tell me what might be the possibe > reasons for this? > > Thanks in advance, > > Liisa Koski > Bioinformatics Programmer > > > ------------------------------------------------------------------------------ > Come build with us! The BlackBerry(R) Developer Conference in SF, CA > is the only developer event you need to attend this year. Jumpstart your > developing skills, take BlackBerry mobile applications to market and stay > ahead of the curve. Join us from November 9 - 12, 2009. Register now! > http://p.sf.net/sfu/devconference > _______________________________________________ > Gmod-gbrowse mailing list > Gmod-gbrowse@... > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse > > -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research ------------------------------------------------------------------------------ Come build with us! The BlackBerry(R) Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9 - 12, 2009. Register now! http://p.sf.net/sfu/devconference _______________________________________________ Gmod-gbrowse mailing list Gmod-gbrowse@... https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse |
||||||||||||||||||||
|
|
Re: GBrowse2 installed but no image from SQL data
by Scott Cain-4
::
Rate this Message:
Hi Liisa,
As it happens, I am currently helping to teach a course where some of the students are trying GBrowse2, and one just had exactly the same phenotype. He cleared it up by simplifying his configuration down to the bare bones and then realizing the he had misconfigured a path to a file or directory. I suggest you try the same. Scott On Fri, Oct 23, 2009 at 10:22 AM, Liisa Koski <liisa.koski@...> wrote:
-- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research ------------------------------------------------------------------------------ Come build with us! The BlackBerry(R) Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9 - 12, 2009. Register now! http://p.sf.net/sfu/devconference _______________________________________________ Gmod-gbrowse mailing list Gmod-gbrowse@... https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse |
| Free embeddable forum powered by Nabble | Forum Help |
