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Graphical libraries
by Pierre-Yves-3
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Dear all,
I have been googling a bit but couldn't find really significant hits. I even found a similar question asked in 2004 here, but there has been no answer at that time. I would be looking for a library (or some code) to draw chromosomes and add some texte/links on the picture. Has someone ever done this ? And if yes, using what ? Thanks for your help, Best regards, Pierre _______________________________________________ Biojava-l mailing list - Biojava-l@... http://lists.open-bio.org/mailman/listinfo/biojava-l |
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Re: Graphical libraries
by Richard Holland-6
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You could ask the Ensembl team what they use to produce the chromosome
outlines on the Ensembl website? cheers, Richard On 2 Oct 2009, at 16:49, Pierre-Yves wrote: > Dear all, > > I have been googling a bit but couldn't find really significant hits. > I even found a similar question asked in 2004 here, but there has been > no answer at that time. > I would be looking for a library (or some code) to draw chromosomes > and > add some texte/links on the picture. > Has someone ever done this ? > And if yes, using what ? > > Thanks for your help, > > Best regards, > Pierre > > _______________________________________________ > Biojava-l mailing list - Biojava-l@... > http://lists.open-bio.org/mailman/listinfo/biojava-l -- Richard Holland, BSc MBCS Operations and Delivery Director, Eagle Genomics Ltd T: +44 (0)1223 654481 ext 3 | E: holland@... http://www.eaglegenomics.com/ _______________________________________________ Biojava-l mailing list - Biojava-l@... http://lists.open-bio.org/mailman/listinfo/biojava-l |
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Re: Graphical libraries
by Andy Yates-3
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I know PSU at the Sanger produced something which can draw circular
chromosomes if you're into that kind of thing; Ensembl Genomes uses that for their karyotype views Andy On 04/10/09 21:52, Richard Holland wrote: > You could ask the Ensembl team what they use to produce the chromosome > outlines on the Ensembl website? > > cheers, > Richard > > On 2 Oct 2009, at 16:49, Pierre-Yves wrote: > >> Dear all, >> >> I have been googling a bit but couldn't find really significant hits. >> I even found a similar question asked in 2004 here, but there has been >> no answer at that time. >> I would be looking for a library (or some code) to draw chromosomes and >> add some texte/links on the picture. >> Has someone ever done this ? >> And if yes, using what ? >> >> Thanks for your help, >> >> Best regards, >> Pierre >> >> _______________________________________________ >> Biojava-l mailing list - Biojava-l@... >> http://lists.open-bio.org/mailman/listinfo/biojava-l > > -- > Richard Holland, BSc MBCS > Operations and Delivery Director, Eagle Genomics Ltd > T: +44 (0)1223 654481 ext 3 | E: holland@... > http://www.eaglegenomics.com/ > > _______________________________________________ > Biojava-l mailing list - Biojava-l@... > http://lists.open-bio.org/mailman/listinfo/biojava-l Biojava-l mailing list - Biojava-l@... http://lists.open-bio.org/mailman/listinfo/biojava-l |
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Re: Graphical libraries
by Andy Law
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I have some code that draws linear chromosomes with banding patterns,
if that is what you are looking for? Drop me an email off-list and we'll see if there's something that you can use. On 2 Oct 2009, at 16:49, Pierre-Yves wrote: > Dear all, > > I have been googling a bit but couldn't find really significant hits. > I even found a similar question asked in 2004 here, but there has been > no answer at that time. > I would be looking for a library (or some code) to draw chromosomes > and > add some texte/links on the picture. > Has someone ever done this ? > And if yes, using what ? > > Later, Andy -------- Yada, yada, yada... The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336 Disclaimer: This e-mail and any attachments are confidential and intended solely for the use of the recipient(s) to whom they are addressed. If you have received it in error, please destroy all copies and inform the sender. _______________________________________________ Biojava-l mailing list - Biojava-l@... http://lists.open-bio.org/mailman/listinfo/biojava-l |
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Re: Graphical libraries
by Pierre-Yves-3
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> You could ask the Ensembl team what they use to produce the
> chromosome > outlines on the Ensembl website? Thanks for your suggestion, I have asked them and will let you know what the answer is. Best regards, Pierre _______________________________________________ Biojava-l mailing list - Biojava-l@... http://lists.open-bio.org/mailman/listinfo/biojava-l |
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Re: Graphical libraries
by Pierre-Yves-3
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On Mon, 2009-10-05 at 09:41 +0100, Andy Yates wrote:
> I know PSU at the Sanger produced something which can draw circular > chromosomes if you're into that kind of thing; Ensembl Genomes uses > that > for their karyotype views In my case, I am more interested in linear chromosomes but I keep in mind your suggestion if I need to draw a circular chromosomes once. Thanks again, Best regards, Pierre _______________________________________________ Biojava-l mailing list - Biojava-l@... http://lists.open-bio.org/mailman/listinfo/biojava-l |
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