HDF5 IO

[Darren Weber-3]

Does ITK 3.16.0 provide IO for HDF5 files?

We would like to export data into the HDF5 format to work with it in Imaris.
http://www.bitplane.com/go/products/imaris

TIA,
Darren


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[Vladimir FONOV]

Hello,

Darren Weber wrote:
> Does ITK 3.16.0 provide IO for HDF5 files?
>
> We would like to export data into the HDF5 format to work with it in Imaris.
> http://www.bitplane.com/go/products/imaris

There is support for MINC2 file format through ITK_USE_MINC2 option in
the advanced options section, or using separate package EZMINC:
http://www.bic.mni.mcgill.ca/~vfonov/software/ezminc_r36.tar.gz
MINC2 format is using HDF5 format for storing data on disk.

To build either of them it you will need
netcdf 3.xx, hdf5 1.6.x and minc2 (
http://packages.bic.mni.mcgill.ca/tgz/minc-2.0.18.tar.gz ) libraries
If you will be using EZMINC, set environment variable MINC_FORCE_V2=1 to
create files in HDF5 format.


P.S. I recommend using EZMINC.
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