Hibernate3 and mapping resource in hibernate.cfg.xml

[Francois Le Fevre]

Dear All
I am working in a research team on metabolism.
I ma trying to use Maven Hibernate3 plugin.

I am facing one difficulty.
I am not able to generate the java class from reverse engineering.
Here the error message

17:31:25,104  INFO org.hibernate.cfg.Configuration - configuring from url: file:/env/export/nfs2/nemo/home/flefevre/new/programs/workspace-jeegalileo/microscope_orm/target/hibernate3/generated-mappings/hibernate.cfg.xml
17:31:25,273  INFO org.hibernate.cfg.Configuration - Reading mappings from resource : /env/export/nfs1/home/flefevre/newhome/programs/workspace-jeegalileo/microscope_orm/target/hibernate3/generated-mappings/fr/genoscope/agc/microscope/microscopeorm/Amiga.hbm.xml
[INFO] ------------------------------------------------------------------------
[ERROR] FATAL ERROR
[INFO] ------------------------------------------------------------------------
[INFO] resource: /env/export/nfs1/home/flefevre/newhome/programs/workspace-jeegalileo/microscope_orm/target/hibernate3/generated-mappings/fr/genoscope/agc/microscope/microscopeorm/Amiga.hbm.xml not found
[INFO] ------------------------------------------------------------------------
[INFO] Trace
org.hibernate.MappingNotFoundException: resource: /env/export/nfs1/home/flefevre/newhome/programs/workspace-jeegalileo/microscope_orm/target/hibernate3/generated-mappings/fr/genoscope/agc/microscope/microscopeorm/Amiga.hbm.xml not found

It seems that the cfg.xml is not well referencing the hbm.xml files
Here the hibernate.cfg.xml

<?xml version="1.0" encoding="utf-8"?>
<!DOCTYPE hibernate-configuration PUBLIC
"-//Hibernate/Hibernate Configuration DTD 3.0//EN"
"http://hibernate.sourceforge.net/hibernate-configuration-3.0.dtd">
<hibernate-configuration>
    <session-factory>
        <property name="hibernate.connection.driver_class">com.mysql.jdbc.Driver</property>
        <property name="hibernate.connection.password">admagc21NFS</property>
        <property name="hibernate.connection.url">jdbc:mysql://etna11.genoscope.cns.fr:3306/pkgdb_dev</property>
        <property name="hibernate.connection.username">agc</property>
        <property name="hibernate.dialect">org.hibernate.dialect.MySQL5Dialect</property>
        <mapping resource="fr/genoscope/agc/microscope/microscopeorm/Amiga.hbm.xml" />
        <mapping resource="fr/genoscope/agc/microscope/microscopeorm/GcRegion.hbm.xml" />
    </session-factory>
</hibernate-configuration>

Here one of my hbm.xml
<?xml version="1.0"?>
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN"
"http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
<!-- Generated Oct 15, 2009 5:27:29 PM by Hibernate Tools 3.2.2.GA -->
<hibernate-mapping>
    <class name="fr.genoscope.agc.microscope.microscopeorm.AfcClass" table="AFC_Class" catalog="pkgdb_dev">
        <id name="goId" type="int">
            <column name="GO_id" />
            <generator class="assigned" />
        </id>
        <property name="SId" type="int">
            <column name="S_id" not-null="true" />
        </property>
        <property name="acClass" type="byte">
            <column name="AC_class" not-null="true" />
        </property>
        <property name="acCoeff" type="float">
            <column name="AC_coeff" precision="12" scale="0" not-null="true" />
        </property>
    </class>
</hibernate-mapping>

Do you have any idea to solve it?
Here my pom.xml


Thanks.

Francois

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
    xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
    <modelVersion>4.0.0</modelVersion>
    <groupId>fr.genoscope.agc.microscope</groupId>
    <artifactId>microscope_orm</artifactId>
    <version>0.0.1-SNAPSHOT</version>

    <description>The concept of Genosphere Project</description>

    <url>http://villarica.genoscope.cns.fr/mvn/${project.artifactId}</url>
    <inceptionYear>2009</inceptionYear>

    <organization>
        <name>Genoscope</name>
        <url>http://www.genoscope.cns.fr/</url>
    </organization>

    <licenses>
        <license>
            <name>Copyright Genoscope</name>
            <url>LICENSE.txt</url>
            <distribution>flefevre@...</distribution>
            <comments>If interest in this project, please contact Francois LE FEVRE, flefevre AT genoscope.cns.fr</comments>
        </license>
    </licenses>

    <developers>
        <developer>
            <id>flefevre</id>
            <name>Francois LE FEVRE</name>
            <organization>Genoscope</organization>
            <organizationUrl>http://www.genoscope.cns.fr/agc</organizationUrl>
            <email>http://mailhide.recaptcha.net/d?k=013tLvh9jN7zlHo24XQyxLt2Nw5-mwbmTh9wgfNDht29JTyxQXS_d8E=</email>
            <roles>
                <role>Architect</role>
                <role>Manager</role>
            </roles>
        </developer>
    </developers>

    <!-- The issue management system -->
    <issueManagement>
        <system>trac</system>
        <url>http://villarica.genoscope.cns.fr/trac/${project.artifactId}</url>
    </issueManagement>

    <!-- Continuous integration process-->
    <ciManagement>
        <system>continuum</system>
        <url>http://villarica.genoscope.cns.fr/continuum</url>
        <notifiers>
            <notifier>
                <type>mail</type>
                <sendOnError>true</sendOnError>
                <sendOnFailure>true</sendOnFailure>
                <sendOnSuccess>true</sendOnSuccess>
                <sendOnWarning>true</sendOnWarning>
                <configuration>
                    <address>flefevre@...</address>
                </configuration>
            </notifier>
        </notifiers>
    </ciManagement>

    <!-- Project Distribution -->
    <!-- Should be present only for Continum user -->
    <distributionManagement>

        <!-- Configuration to deploy project web site -->
        <site>
            <id>Genosphere Maven Server Projects</id>
            <url>
                scp://villarica.genoscope.cns.fr/env/cns/genosphere/maven/${project.artifactId}
            </url>
        </site>

        <!--
            Configuration to deploy project product ( pom.xml, uml.zip, jar, war,
            ear into maven repository proxy
        -->
        <repository>
            <id>genoscope</id>
            <name>Inhouse Internal Release Repository</name>
            <url>
            file:///opt/jboss/server/genosphere/data/archiva-repositories/genoscope
            </url>
        </repository>
        <snapshotRepository>
            <id>snapshots</id>
            <name>Inhouse Internal Snapshot Repository</name>
            <url>
            file:///opt/jboss/server/genosphere/data/archiva-repositories/snapshots
            </url>
            <uniqueVersion>false</uniqueVersion>
        </snapshotRepository>

    </distributionManagement>


    <!-- The source code management -->
    <scm>
        <connection>scm:svn:http://villarica.genoscope.cns.fr/svn/${project.artifactId}/trunk/</connection>
        <developerConnection>scm:svn:http://villarica.genoscope.cns.fr/svn/${project.artifactId}/trunk/</developerConnection>
        <url>scm:svn:http://villarica.genoscope.cns.fr/svn/${project.artifactId}/trunk/</url>
    </scm>


    <reporting>

        <!--
            See
            http://maven.apache.org/plugins/maven-project-info-reports-plugin/index.html

            * project-info-reports:cim is used to generate the Project Continuous
            Integration System report. * project-info-reports:dependencies is
            used to generate the Project Dependencies report. *
            project-info-reports:dependency-convergence is used to generate the
            Project Dependency Convergence report for reactor builds. *
            project-info-reports:dependency-management is used to generate the
            Project DependencyManagement report. * project-info-reports:index is
            used to generate the Project index page. *
            project-info-reports:issue-tracking is used to generate the Project
            Issue Tracking report. * project-info-reports:license is used to
            generate the Project License report. *
            project-info-reports:mailing-list is used to generate the Project
            Mailing List report. * project-info-reports:plugin-management is used
            to generate the Project PluginManagement report. *
            project-info-reports:plugins is used to generate the Project Plugins
            report. * project-info-reports:project-team is used to generate the
            Project Team report. * project-info-reports:scm is used to generate
            the Project Source Code Management report. *
            project-info-reports:summary is used to generate the Project
            information reports summary. checkstyle 2.3 2009-07-14 Generate a
            checkstyle report. SVN JIRA clover 2.4 2007-04-23 Generate a Clover
            report. NOTE: Moved to Atlassian.com SVN JIRA doap 1.0 2008-08-01
            Generate a Description of a Project (DOAP) file from a POM. SVN JIRA
            docck 1.0 2008-11-16 Documentation checker plugin. SVN JIRA OK
            javadoc 2.6 2009-07-29 Generate Javadoc for the project. SVN JIRA jxr
            2.1 2007-04-05 Generate a source cross reference. SVN JIRA pmd 2.4
            2008-01-08 Generate a PMD report. SVN JIRA project-info-reports 2.1.2
            2009-07-23 Generate standard project reports. SVN JIRA
            surefire-report 2.4.3 2008-05-14 Generate a report based on the
            results of unit tests.
        -->

        <plugins>

            <!--
                CHANGE LOG Generate a list of recent changes from your SCM.
            -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-changelog-plugin</artifactId>
                <version>2.0</version>
                <!-- This version is not working version>2.1</version -->
            </plugin>

            <!--
                CHANGES Generate a report from issue tracking or a change document.
            -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-changes-plugin</artifactId>
                <configuration>
                    <fromDeveloperId>flefevre</fromDeveloperId>
                    <xmlPath>${basedir}/src/site/resources/changes.xml</xmlPath>
                    <!-- complex query for trac -->
                    <!--
                        query>status=accepted&amp;status=assigned&amp;status=new&amp;status=reopened&amp;order=priority&amp;component=${project.artifactId}</query
                    -->
                    <tracUser>flefevre</tracUser>
                    <!-- tracPassword>my password</tracPassword-->
                    <!--
                        smtpHost>smtp.genoscope.cns.fr</smtpHost> <smtpPort
                        implementation="java.lang.Integer">25</smtpPort> <toAddresses>
                        <toAddress
                        implementation="java.lang.String">flefevre@...</toAddress>
                        </toAddresses
                    -->
                </configuration>
                <reportSets>
                    <reportSet>
                        <reports>
                            <report>changes-report</report>
                        </reports>
                    </reportSet>
                </reportSets>
                <!--
                    http://maven.apache.org/plugins/maven-changes-plugin/examples/changes-file-validation.html
                    <executions> <execution> <id>validate-changes</id>
                    <phase>pre-site</phase> <goals> <goal>changes-validate</goal>
                    </goals> <configuration> < if set to true the build will fail if
                    the changes file is invalid, if set to false warnings will be
                    logged. > <failOnError>true</failOnError> </configuration>
                    </execution> </executions>
                -->
            </plugin>

            <!-- checkstyle
Generate a checkstyle report.
 -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-checkstyle-plugin</artifactId>
                <version>2.3</version>
            </plugin>



            <!-- JAVADOC -->
            <plugin>
                <artifactId>maven-javadoc-plugin</artifactId>
            </plugin>
            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>jxr-maven-plugin</artifactId>
            </plugin>

            <!-- CHANGE LOG FROM SCM -->

            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>changelog-maven-plugin</artifactId>
            </plugin>

            <!-- JUNIT REPORT -->
            <plugin>
                <artifactId>maven-surefire-plugin</artifactId>
            </plugin>

            <!-- TEST COVERAGE -->
            <plugin>
                <artifactId>maven-clover-plugin</artifactId>
            </plugin>

            <!-- CODE ANALYSIS -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>

                <artifactId>maven-pmd-plugin</artifactId>
                <configuration>
                    <targetjdk>1.5</targetjdk>
                    <rulesets>
                        <ruleset>/rulesets/basic.xml</ruleset>
                        <ruleset>/rulesets/controversial.xml</ruleset>
                    </rulesets>
                    <format>xml</format>
                    <linkXref>true</linkXref>
                    <sourceEncoding>utf-8</sourceEncoding>

                    <minimumTokens>100</minimumTokens>
                </configuration>
            </plugin>

            <!-- RELEASE DOCUMENTATION -->
            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>changes-maven-plugin</artifactId>
            </plugin>

            <!-- TODO LIST -->
            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>taglist-maven-plugin</artifactId>
            </plugin>

        </plugins>
    </reporting>

    <dependencies>
        <dependency>
            <groupId>org.hibernate</groupId>
            <artifactId>hibernate</artifactId>
            <version>3.2.6.ga</version>
        </dependency>
        <dependency>
            <groupId>org.hibernate</groupId>
            <artifactId>hibernate-annotations</artifactId>
            <version>3.4.0.GA</version>
        </dependency>
        <dependency>
            <groupId>org.hibernate</groupId>
            <artifactId>hibernate-tools</artifactId>
            <version>3.2.3.GA</version>
        </dependency>


        <dependency>
            <groupId>junit</groupId>
            <artifactId>junit</artifactId>
            <version>3.8.1</version>
            <scope>test</scope>
        </dependency>

    </dependencies>

    <properties>
        <!-- Database settings (overriden in profiles) -->
        <hibernate.dialect>org.hibernate.dialect.MySQL5Dialect</hibernate.dialect>
        <jdbc.groupId>mysql</jdbc.groupId>
        <jdbc.artifactId>mysql-connector-java</jdbc.artifactId>
        <jdbc.version>5.1.6</jdbc.version>
        <jdbc.driverClassName>com.mysql.jdbc.Driver</jdbc.driverClassName>
        <jdbc.url>jdbc:mysql://etna11.genoscope.cns.fr:3306/pkgdb_dev</jdbc.url>
        <jdbc.username>agc</jdbc.username>
        <jdbc.password>admagc21NFS</jdbc.password>
    </properties>

    <build>
        <extensions>
            <extension>
                <groupId>mysql</groupId>
                <artifactId>mysql-connector-java</artifactId>
                <version>5.1.6</version>
            </extension>
        </extensions>


        <plugins>

            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>hibernate3-maven-plugin</artifactId>
                <version>2.2</version>
                <!--  executions>
                    <execution>
                        <id>create-hibernate-configuration</id>
                        <phase>generate-resources</phase>
                        <goals>
                            <goal>hbm2cfgxml</goal>
                            <goal>hbm2hbmxml</goal>
                        </goals>
                    </execution>
                    <execution>
                        <id>create-hibernate-classes</id>
                        <phase>process-resources</phase>
                        <goals>
                            <goal>hbm2java</goal>
                        </goals>
                    </execution>
                </executions-->

                <configuration>

                    <components>
                        <!-- component>
                            <name>hbmtemplate</name>
                        </component-->

                        <!--
                            Generates a hibernate.cfg.xml file based on an existing database
                            schema. You would use this goal to build a Hibernate
                            configuration from an existing database.
                        -->
                        <component>
                            <name>hbm2cfgxml</name>
                            <implementation>jdbcconfiguration</implementation>
                            <!-- outputDirectory>target/hibernate3/generated-mappings</outputDirectory-->
                        </component>


                        <component>
                            <name>hbm2hbmxml</name>
                            <implementation>jdbcconfiguration</implementation>
                            <!-- outputDirectory>target/hibernate3/generated-mappings</outputDirectory-->
                        </component>

                        <component>
                            <name>hbm2java</name>
                            <!--implementation>configuration</implementation-->
                            <implementation>annotationconfiguration</implementation>
                            <!-- outputDirectory>target/hibernate3/generated-sources</outputDirectory-->
                        </component>

                    </components>
                    <componentProperties>

                        <template>src/main/resources/CustomPojo.ftl</template>


                        <!-- implementation></implementation-->
                        <configurationfile>/target/hibernate3/generated-mappings/hibernate.cfg.xml</configurationfile>
                        <!-- propertyfile>/src/main/config/hibernate-mysql.properties</propertyfile-->
                        <entityresolver>org.xml.sax.EntityResolver</entityresolver>
                        <namingstrategy>org.hibernate.cfg.DefaultNamingStrategy</namingstrategy>
                        <!-- persistenceunit></persistenceunit-->
                        <packagename>fr.genoscope.agc.microscope.microscopeorm</packagename>
                        <!--
                            revengfile></revengfile> <reversestrategy></reversestrategy
                        -->
                        <detectmanytomany>true</detectmanytomany>
                        <detectoptmisticlock>true</detectoptmisticlock>
                        <export>false</export>
                        <update>false</update>
                        <drop>false</drop>
                        <create>false</create>
                        <!--
                            outputfilename></outputfilename> <delimiter>;</delimiter>
                            <format>false</format
                        -->
                        <jdk5>false</jdk5>
                        <ejb3>false</ejb3>
                        <!--
                            filepattern></filepattern> <template></template>
                            <templatepath></templatepath> <exporterclass></exporterclass
                        -->
                    </componentProperties>
                </configuration>
                <dependencies>
                    <dependency>
                        <groupId>mysql</groupId>
                        <artifactId>mysql-connector-java</artifactId>
                        <version>5.1.6</version>
                    </dependency>
                </dependencies>
            </plugin>

            <!-- WEB SITE GENERATION -->
            <plugin>
                <artifactId>maven-site-plugin</artifactId>
                <configuration>
                    <locales>en,fr</locales>
                </configuration>
            </plugin>

            <!-- COMPILATION -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>2.0.2</version>
                <configuration>
                    <source>1.5</source>
                    <target>1.5</target>
                </configuration>
            </plugin>
        </plugins>
    </build>

</project>

[Francois Le Fevre]

Dear all,
I have found the solution.
I forgot to put my hbm in a resource forlder in order that they are included in the classpath.
Thanks you.
Francois

Dear All
I am working in a research team on metabolism.
I ma trying to use Maven Hibernate3 plugin.

I am facing one difficulty.
I am not able to generate the java class from reverse engineering.
Here the error message

17:31:25,104  INFO org.hibernate.cfg.Configuration - configuring from url: file:/env/export/nfs2/nemo/home/flefevre/new/programs/workspace-jeegalileo/microscope_orm/target/hibernate3/generated-mappings/hibernate.cfg.xml
17:31:25,273  INFO org.hibernate.cfg.Configuration - Reading mappings from resource : /env/export/nfs1/home/flefevre/newhome/programs/workspace-jeegalileo/microscope_orm/target/hibernate3/generated-mappings/fr/genoscope/agc/microscope/microscopeorm/Amiga.hbm.xml
[INFO] ------------------------------------------------------------------------
[ERROR] FATAL ERROR
[INFO] ------------------------------------------------------------------------
[INFO] resource: /env/export/nfs1/home/flefevre/newhome/programs/workspace-jeegalileo/microscope_orm/target/hibernate3/generated-mappings/fr/genoscope/agc/microscope/microscopeorm/Amiga.hbm.xml not found
[INFO] ------------------------------------------------------------------------
[INFO] Trace
org.hibernate.MappingNotFoundException: resource: /env/export/nfs1/home/flefevre/newhome/programs/workspace-jeegalileo/microscope_orm/target/hibernate3/generated-mappings/fr/genoscope/agc/microscope/microscopeorm/Amiga.hbm.xml not found

It seems that the cfg.xml is not well referencing the hbm.xml files
Here the hibernate.cfg.xml

<?xml version="1.0" encoding="utf-8"?>
<!DOCTYPE hibernate-configuration PUBLIC
"-//Hibernate/Hibernate Configuration DTD 3.0//EN"
"http://hibernate.sourceforge.net/hibernate-configuration-3.0.dtd">
<hibernate-configuration>
    <session-factory>
        <property name="hibernate.connection.driver_class">com.mysql.jdbc.Driver</property>
        <property name="hibernate.connection.password">admagc21NFS</property>
        <property name="hibernate.connection.url">jdbc:mysql://etna11.genoscope.cns.fr:3306/pkgdb_dev</property>
        <property name="hibernate.connection.username">agc</property>
        <property name="hibernate.dialect">org.hibernate.dialect.MySQL5Dialect</property>
        <mapping resource="fr/genoscope/agc/microscope/microscopeorm/Amiga.hbm.xml" />
        <mapping resource="fr/genoscope/agc/microscope/microscopeorm/GcRegion.hbm.xml" />
    </session-factory>
</hibernate-configuration>

Here one of my hbm.xml
<?xml version="1.0"?>
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN"
"http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
<!-- Generated Oct 15, 2009 5:27:29 PM by Hibernate Tools 3.2.2.GA -->
<hibernate-mapping>
    <class name="fr.genoscope.agc.microscope.microscopeorm.AfcClass" table="AFC_Class" catalog="pkgdb_dev">
        <id name="goId" type="int">
            <column name="GO_id" />
            <generator class="assigned" />
        </id>
        <property name="SId" type="int">
            <column name="S_id" not-null="true" />
        </property>
        <property name="acClass" type="byte">
            <column name="AC_class" not-null="true" />
        </property>
        <property name="acCoeff" type="float">
            <column name="AC_coeff" precision="12" scale="0" not-null="true" />
        </property>
    </class>
</hibernate-mapping>

Do you have any idea to solve it?
Here my pom.xml


Thanks.

Francois

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
    xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
    <modelVersion>4.0.0</modelVersion>
    <groupId>fr.genoscope.agc.microscope</groupId>
    <artifactId>microscope_orm</artifactId>
    <version>0.0.1-SNAPSHOT</version>

    <description>The concept of Genosphere Project</description>

    <url>http://villarica.genoscope.cns.fr/mvn/${project.artifactId}</url>
    <inceptionYear>2009</inceptionYear>

    <organization>
        <name>Genoscope</name>
        <url>http://www.genoscope.cns.fr/</url>
    </organization>

    <licenses>
        <license>
            <name>Copyright Genoscope</name>
            <url>LICENSE.txt</url>
            <distribution>flefevre@...</distribution>
            <comments>If interest in this project, please contact Francois LE FEVRE, flefevre AT genoscope.cns.fr</comments>
        </license>
    </licenses>

    <developers>
        <developer>
            <id>flefevre</id>
            <name>Francois LE FEVRE</name>
            <organization>Genoscope</organization>
            <organizationUrl>http://www.genoscope.cns.fr/agc</organizationUrl>
            <email>http://mailhide.recaptcha.net/d?k=013tLvh9jN7zlHo24XQyxLt2Nw5-mwbmTh9wgfNDht29JTyxQXS_d8E=</email>
            <roles>
                <role>Architect</role>
                <role>Manager</role>
            </roles>
        </developer>
    </developers>

    <!-- The issue management system -->
    <issueManagement>
        <system>trac</system>
        <url>http://villarica.genoscope.cns.fr/trac/${project.artifactId}</url>
    </issueManagement>

    <!-- Continuous integration process-->
    <ciManagement>
        <system>continuum</system>
        <url>http://villarica.genoscope.cns.fr/continuum</url>
        <notifiers>
            <notifier>
                <type>mail</type>
                <sendOnError>true</sendOnError>
                <sendOnFailure>true</sendOnFailure>
                <sendOnSuccess>true</sendOnSuccess>
                <sendOnWarning>true</sendOnWarning>
                <configuration>
                    <address>flefevre@...</address>
                </configuration>
            </notifier>
        </notifiers>
    </ciManagement>

    <!-- Project Distribution -->
    <!-- Should be present only for Continum user -->
    <distributionManagement>

        <!-- Configuration to deploy project web site -->
        <site>
            <id>Genosphere Maven Server Projects</id>
            <url>
                scp://villarica.genoscope.cns.fr/env/cns/genosphere/maven/${project.artifactId}
            </url>
        </site>

        <!--
            Configuration to deploy project product ( pom.xml, uml.zip, jar, war,
            ear into maven repository proxy
        -->
        <repository>
            <id>genoscope</id>
            <name>Inhouse Internal Release Repository</name>
            <url>
            file:///opt/jboss/server/genosphere/data/archiva-repositories/genoscope
            </url>
        </repository>
        <snapshotRepository>
            <id>snapshots</id>
            <name>Inhouse Internal Snapshot Repository</name>
            <url>
            file:///opt/jboss/server/genosphere/data/archiva-repositories/snapshots
            </url>
            <uniqueVersion>false</uniqueVersion>
        </snapshotRepository>

    </distributionManagement>


    <!-- The source code management -->
    <scm>
        <connection>scm:svn:http://villarica.genoscope.cns.fr/svn/${project.artifactId}/trunk/</connection>
        <developerConnection>scm:svn:http://villarica.genoscope.cns.fr/svn/${project.artifactId}/trunk/</developerConnection>
        <url>scm:svn:http://villarica.genoscope.cns.fr/svn/${project.artifactId}/trunk/</url>
    </scm>


    <reporting>

        <!--
            See
            http://maven.apache.org/plugins/maven-project-info-reports-plugin/index.html

            * project-info-reports:cim is used to generate the Project Continuous
            Integration System report. * project-info-reports:dependencies is
            used to generate the Project Dependencies report. *
            project-info-reports:dependency-convergence is used to generate the
            Project Dependency Convergence report for reactor builds. *
            project-info-reports:dependency-management is used to generate the
            Project DependencyManagement report. * project-info-reports:index is
            used to generate the Project index page. *
            project-info-reports:issue-tracking is used to generate the Project
            Issue Tracking report. * project-info-reports:license is used to
            generate the Project License report. *
            project-info-reports:mailing-list is used to generate the Project
            Mailing List report. * project-info-reports:plugin-management is used
            to generate the Project PluginManagement report. *
            project-info-reports:plugins is used to generate the Project Plugins
            report. * project-info-reports:project-team is used to generate the
            Project Team report. * project-info-reports:scm is used to generate
            the Project Source Code Management report. *
            project-info-reports:summary is used to generate the Project
            information reports summary. checkstyle 2.3 2009-07-14 Generate a
            checkstyle report. SVN JIRA clover 2.4 2007-04-23 Generate a Clover
            report. NOTE: Moved to Atlassian.com SVN JIRA doap 1.0 2008-08-01
            Generate a Description of a Project (DOAP) file from a POM. SVN JIRA
            docck 1.0 2008-11-16 Documentation checker plugin. SVN JIRA OK
            javadoc 2.6 2009-07-29 Generate Javadoc for the project. SVN JIRA jxr
            2.1 2007-04-05 Generate a source cross reference. SVN JIRA pmd 2.4
            2008-01-08 Generate a PMD report. SVN JIRA project-info-reports 2.1.2
            2009-07-23 Generate standard project reports. SVN JIRA
            surefire-report 2.4.3 2008-05-14 Generate a report based on the
            results of unit tests.
        -->

        <plugins>

            <!--
                CHANGE LOG Generate a list of recent changes from your SCM.
            -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-changelog-plugin</artifactId>
                <version>2.0</version>
                <!-- This version is not working version>2.1</version -->
            </plugin>

            <!--
                CHANGES Generate a report from issue tracking or a change document.
            -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-changes-plugin</artifactId>
                <configuration>
                    <fromDeveloperId>flefevre</fromDeveloperId>
                    <xmlPath>${basedir}/src/site/resources/changes.xml</xmlPath>
                    <!-- complex query for trac -->
                    <!--
                        query>status=accepted&amp;status=assigned&amp;status=new&amp;status=reopened&amp;order=priority&amp;component=${project.artifactId}</query
                    -->
                    <tracUser>flefevre</tracUser>
                    <!-- tracPassword>my password</tracPassword-->
                    <!--
                        smtpHost>smtp.genoscope.cns.fr</smtpHost> <smtpPort
                        implementation="java.lang.Integer">25</smtpPort> <toAddresses>
                        <toAddress
                        implementation="java.lang.String">flefevre@...</toAddress>
                        </toAddresses
                    -->
                </configuration>
                <reportSets>
                    <reportSet>
                        <reports>
                            <report>changes-report</report>
                        </reports>
                    </reportSet>
                </reportSets>
                <!--
                    http://maven.apache.org/plugins/maven-changes-plugin/examples/changes-file-validation.html
                    <executions> <execution> <id>validate-changes</id>
                    <phase>pre-site</phase> <goals> <goal>changes-validate</goal>
                    </goals> <configuration> < if set to true the build will fail if
                    the changes file is invalid, if set to false warnings will be
                    logged. > <failOnError>true</failOnError> </configuration>
                    </execution> </executions>
                -->
            </plugin>

            <!-- checkstyle
Generate a checkstyle report.
 -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-checkstyle-plugin</artifactId>
                <version>2.3</version>
            </plugin>



            <!-- JAVADOC -->
            <plugin>
                <artifactId>maven-javadoc-plugin</artifactId>
            </plugin>
            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>jxr-maven-plugin</artifactId>
            </plugin>

            <!-- CHANGE LOG FROM SCM -->

            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>changelog-maven-plugin</artifactId>
            </plugin>

            <!-- JUNIT REPORT -->
            <plugin>
                <artifactId>maven-surefire-plugin</artifactId>
            </plugin>

            <!-- TEST COVERAGE -->
            <plugin>
                <artifactId>maven-clover-plugin</artifactId>
            </plugin>

            <!-- CODE ANALYSIS -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>

                <artifactId>maven-pmd-plugin</artifactId>
                <configuration>
                    <targetjdk>1.5</targetjdk>
                    <rulesets>
                        <ruleset>/rulesets/basic.xml</ruleset>
                        <ruleset>/rulesets/controversial.xml</ruleset>
                    </rulesets>
                    <format>xml</format>
                    <linkXref>true</linkXref>
                    <sourceEncoding>utf-8</sourceEncoding>

                    <minimumTokens>100</minimumTokens>
                </configuration>
            </plugin>

            <!-- RELEASE DOCUMENTATION -->
            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>changes-maven-plugin</artifactId>
            </plugin>

            <!-- TODO LIST -->
            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>taglist-maven-plugin</artifactId>
            </plugin>

        </plugins>
    </reporting>

    <dependencies>
        <dependency>
            <groupId>org.hibernate</groupId>
            <artifactId>hibernate</artifactId>
            <version>3.2.6.ga</version>
        </dependency>
        <dependency>
            <groupId>org.hibernate</groupId>
            <artifactId>hibernate-annotations</artifactId>
            <version>3.4.0.GA</version>
        </dependency>
        <dependency>
            <groupId>org.hibernate</groupId>
            <artifactId>hibernate-tools</artifactId>
            <version>3.2.3.GA</version>
        </dependency>


        <dependency>
            <groupId>junit</groupId>
            <artifactId>junit</artifactId>
            <version>3.8.1</version>
            <scope>test</scope>
        </dependency>

    </dependencies>

    <properties>
        <!-- Database settings (overriden in profiles) -->
        <hibernate.dialect>org.hibernate.dialect.MySQL5Dialect</hibernate.dialect>
        <jdbc.groupId>mysql</jdbc.groupId>
        <jdbc.artifactId>mysql-connector-java</jdbc.artifactId>
        <jdbc.version>5.1.6</jdbc.version>
        <jdbc.driverClassName>com.mysql.jdbc.Driver</jdbc.driverClassName>
        <jdbc.url>jdbc:mysql://etna11.genoscope.cns.fr:3306/pkgdb_dev</jdbc.url>
        <jdbc.username>agc</jdbc.username>
        <jdbc.password>admagc21NFS</jdbc.password>
    </properties>

    <build>
        <extensions>
            <extension>
                <groupId>mysql</groupId>
                <artifactId>mysql-connector-java</artifactId>
                <version>5.1.6</version>
            </extension>
        </extensions>


        <plugins>

            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>hibernate3-maven-plugin</artifactId>
                <version>2.2</version>
                <!--  executions>
                    <execution>
                        <id>create-hibernate-configuration</id>
                        <phase>generate-resources</phase>
                        <goals>
                            <goal>hbm2cfgxml</goal>
                            <goal>hbm2hbmxml</goal>
                        </goals>
                    </execution>
                    <execution>
                        <id>create-hibernate-classes</id>
                        <phase>process-resources</phase>
                        <goals>
                            <goal>hbm2java</goal>
                        </goals>
                    </execution>
                </executions-->

                <configuration>

                    <components>
                        <!-- component>
                            <name>hbmtemplate</name>
                        </component-->

                        <!--
                            Generates a hibernate.cfg.xml file based on an existing database
                            schema. You would use this goal to build a Hibernate
                            configuration from an existing database.
                        -->
                        <component>
                            <name>hbm2cfgxml</name>
                            <implementation>jdbcconfiguration</implementation>
                            <!-- outputDirectory>target/hibernate3/generated-mappings</outputDirectory-->
                        </component>


                        <component>
                            <name>hbm2hbmxml</name>
                            <implementation>jdbcconfiguration</implementation>
                            <!-- outputDirectory>target/hibernate3/generated-mappings</outputDirectory-->
                        </component>

                        <component>
                            <name>hbm2java</name>
                            <!--implementation>configuration</implementation-->
                            <implementation>annotationconfiguration</implementation>
                            <!-- outputDirectory>target/hibernate3/generated-sources</outputDirectory-->
                        </component>

                    </components>
                    <componentProperties>

                        <template>src/main/resources/CustomPojo.ftl</template>


                        <!-- implementation></implementation-->
                        <configurationfile>/target/hibernate3/generated-mappings/hibernate.cfg.xml</configurationfile>
                        <!-- propertyfile>/src/main/config/hibernate-mysql.properties</propertyfile-->
                        <entityresolver>org.xml.sax.EntityResolver</entityresolver>
                        <namingstrategy>org.hibernate.cfg.DefaultNamingStrategy</namingstrategy>
                        <!-- persistenceunit></persistenceunit-->
                        <packagename>fr.genoscope.agc.microscope.microscopeorm</packagename>
                        <!--
                            revengfile></revengfile> <reversestrategy></reversestrategy
                        -->
                        <detectmanytomany>true</detectmanytomany>
                        <detectoptmisticlock>true</detectoptmisticlock>
                        <export>false</export>
                        <update>false</update>
                        <drop>false</drop>
                        <create>false</create>
                        <!--
                            outputfilename></outputfilename> <delimiter>;</delimiter>
                            <format>false</format
                        -->
                        <jdk5>false</jdk5>
                        <ejb3>false</ejb3>
                        <!--
                            filepattern></filepattern> <template></template>
                            <templatepath></templatepath> <exporterclass></exporterclass
                        -->
                    </componentProperties>
                </configuration>
                <dependencies>
                    <dependency>
                        <groupId>mysql</groupId>
                        <artifactId>mysql-connector-java</artifactId>
                        <version>5.1.6</version>
                    </dependency>
                </dependencies>
            </plugin>

            <!-- WEB SITE GENERATION -->
            <plugin>
                <artifactId>maven-site-plugin</artifactId>
                <configuration>
                    <locales>en,fr</locales>
                </configuration>
            </plugin>

            <!-- COMPILATION -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>2.0.2</version>
                <configuration>
                    <source>1.5</source>
                    <target>1.5</target>
                </configuration>
            </plugin>
        </plugins>
    </build>

</project>