tag:old.nabble.com,2006:forum-3838Nabble - ImageJ Plugins2009-11-20T02:17:58ZThe 'ImageJ Plugins' project is a source of custom plugins for the Image/J software. Image/J is a public domain image processing and analysis program developed in Java (http://rsb.info.nih.gov/ij/). ImageJ Plugins home is <a href="http://sourceforge.net/projects/ij-plugins/" target="_top" rel="nofollow">here</a>.tag:old.nabble.com,2006:post-26436534Create an Tiff image reading pixel values of 16 bit signed image2009-11-20T02:17:58Z2009-11-20T02:17:58ZMuqeet KhanI have a 16-bit signed image, i want to create a tiff image by reading the pixel values of the 16-bit signed image. For some reason i don't get a proper tiff image when doing it. Here are the steps.
<br><br>ImagePlus createImage(ImagePlus imagePlus, ImageProcessor targetImage) {
<br>
<br> int pixelCount = imagePlus.getWidth() * imagePlus.getHeight();
<br> Short pixels[] = new Short[pixelCount]
<br> ImageProcessor iP = imagePlus.getProcessor();
<br> int count = 0;
<br><br> for (int x = 0;x < imagePlus.getWidth(); x++) {
<br>
<br> for (int y = 0; y < imagePlus.getHeight; y++) {
<br> double pixelValue = iP.getPixelValue(x, y);
<br> pixels[count] = pixelValue;
<br> count ++;
<br> }
<br> }
<br>
<br> targetImage.setPixels(pixels);
<br> targetImage .resetMinAndMax();
<br> return new ImagePlus("Image-RXZ", targetImage);
<br>}
<br><br>Is this correct way of doing???<p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-26321979Footprint analysis plugin2009-11-12T08:41:04Z2009-11-12T08:41:04ZimagejinatorHallo,
<br><br>i got a problem with the plugin mentioned above.
<br>In the second step, when i try to mark 4 points with the point selection tool while holding "shift",
<br>the program alerts me that "this command does not work with line selections".
<br>Is there a wrong preference in my own imagej or do i have to change something?
<br><br>Thank you very much for your advice
<br><br>Best
<br><br>Chris<p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-26169624Re: Mean image subtraction2009-11-02T11:20:07Z2009-11-02T11:20:07ZJarek Sacha-2The simplest way to subtract images is like this:
<br><br> targetImage.copyBits(meanImage, 0, 0, Blitter.SUBTRACT);
<br><br>Make sure that you images are FloatProcessor, otherwise you will have problems with negative values.
<br><br>You do not show code that you use for display, so it is hard to say why you have problem there.
<br><br>Jarek
<br><br>You wrote:
<br><br>I have created a mean image out of all the images in a series. Now i would
<div class='shrinkable-quote'><br>>like to subtract the mean image from the actual original image. I do it
<br>>something like this
<br>>
<br>> int origSize = targetImage.getWidth() * targetImage.getHeight();
<br>> int subSize = meanImage.getWidth() * meanImage.getHeight();
<br>>
<br>> for (int x = 0; x < meanImage.getWidth(); x++) {
<br>>
<br>> for(int y = 0; y < meanImage.getHeight(); y++) {
<br>> int subPix = meanImage.get(x, y);
<br>> int origPix = targetImage.get(x, y);
<br>> double newPix = origPix - subPix;
<br>>
<br>> targetImage.set(x, y, (int) Math.round(newPix));
<br>> }
<br>> }
<br>>
<br>>
<br>>I don't see the proper effect on the canvas when i apply this? its
<br>>completely blacked out. Any ideas?
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<br><a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-26072972Mean image subtraction2009-10-26T23:55:13Z2009-10-26T23:55:13ZMuqeet KhanI have created a mean image out of all the images in a series. Now i would like to subtract the mean image from the actual original image. I do it something like this
<br><br> int origSize = targetImage.getWidth() * targetImage.getHeight();
<br> int subSize = meanImage.getWidth() * meanImage.getHeight();
<br><br> for (int x = 0; x < meanImage.getWidth(); x++) {
<br>
<br> for(int y = 0; y < meanImage.getHeight(); y++) {
<br> int subPix = meanImage.get(x, y);
<br> int origPix = targetImage.get(x, y);
<br> double newPix = origPix - subPix;
<br><br> targetImage.set(x, y, (int) Math.round(newPix));
<br> }
<br> }
<br><br><br>I don't see the proper effect on the canvas when i apply this? its completely blacked out. Any ideas?<p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-24265335Re: toggle2009-06-29T18:52:50Z2009-06-29T18:52:50ZJarek Sacha-2This question is more suitable for the main ImageJ mailing list
<br>(<a href="http://rsb.info.nih.gov/ij/list.html" target="_top" rel="nofollow">http://rsb.info.nih.gov/ij/list.html</a>), as it is not related to ij-plugins.
<br><br>I assume that you refer to
<br><a href="http://rsb.info.nih.gov/ij/macros/DrawEllipse.txt" target="_top" rel="nofollow">http://rsb.info.nih.gov/ij/macros/DrawEllipse.txt</a> macro that draws
<br>permanently. Rather than drawing an ellipse you may consider adding and
<br>ROI to ROI Manager, then you can show/hide and ROI.
<br><br>Jarek
<br><br>Stephanie Sandhu wrote:
<br>> Hello,
<br>> I am doing some ImageJ analysis of some cross-sectional areas of mouse
<br>> femurs. I am using the DrawEllipses macro to draw the perimeter and
<br>> draw major/minor axis but I want to be able to toggle the ellipses
<br>> on/off. It would also be nice if I can turn the drawing of the area on
<br>> and off as well. Does anyone know how to toggle either of these on/off?
<br>> Thanks,
<br>> Steph1111
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Hello,<BR>
I am doing some ImageJ analysis of some cross-sectional areas of mouse femurs. I am using the DrawEllipses macro to draw the perimeter and draw major/minor axis but I want to be able to toggle the ellipses on/off. It would also be nice if I can turn the drawing of the area on and off as well. Does anyone know how to toggle either of these on/off?<BR>
Thanks,<BR>Steph1111<BR>
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<br><a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-24189056ITCN macro2009-06-24T10:13:47Z2009-06-24T10:13:47ZGrayson24I need to analyze a couple of thousand images with ITCN, a plug-in for imagej that counts cells. I want some kind of way to automate but can't seem to figure out the language to set parameters. I want
<br>width=6
<br>minimum distance=1
<br>threshold=2
<br><br>Could someone help me out?
<br><br>Plugin can be found here:
<br><a href="http://www.bioimage.ucsb.edu/downloads/automatic-nuclei-counter-plug-in-for-imagej" target="_top" rel="nofollow">http://www.bioimage.ucsb.edu/downloads/automatic-nuclei-counter-plug-in-for-imagej</a><br><br><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-22331229Requesting the user to select a ROI2009-03-04T06:34:29Z2009-03-04T06:34:29ZjoaomarquesHi,
<br><br>I'm developing a program that receives a stack of images. Then, it computes the average of all pixels and displays it as a new image. Then, for the program to keep running, I need the user to select a ROI with the mouse. But I don't know how to do that. How do you get the user to select the ROI and after he does the program keeps running?
<br><br>Thanks,
<br>João<p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-21405104Re: Compression Jpeg Plugin2009-01-11T14:16:37Z2009-01-11T14:16:37ZJarek Sacha-2Kemistry:
<br><br>To see how ImageJ writes JPEG look at method saveAsJpeg(String path) in
<br>class ij.io.FileSaver
<br>(<a href="http://rsb.info.nih.gov/ij/source/ij/io/FileSaver.java" target="_top" rel="nofollow">http://rsb.info.nih.gov/ij/source/ij/io/FileSaver.java</a>), or at method
<br>saveAsJpeg(ImagePlus imp, String path) in ij.plugin.JpegWriter class
<br>(<a href="http://rsb.info.nih.gov/ij/source/ij/plugin/JpegWriter.java" target="_top" rel="nofollow">http://rsb.info.nih.gov/ij/source/ij/plugin/JpegWriter.java</a>).
<br><br>Jarek
<br><br>Kemistry wrote:
<br>> I'm new on this forum.
<br>>
<br>> I would ask you if there's a plugin on the compression jpeg or where i can
<br>> take the code that imagej use to save an image in jpeg format.
<br>>
<br>> Thanks to all and sorry for my english
<br>>
<br>> Hi
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<br><a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-21401020Compression Jpeg Plugin2009-01-11T08:30:44Z2009-01-11T08:30:44ZKemistryHi
<br><br>I'm new on this forum.
<br><br>I would ask you if there's a plugin on the compression jpeg or where i can take the code that imagej use to save an image in jpeg format.
<br><br>Thanks to all and sorry for my english<p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-16169749help with ROIs2008-03-19T18:42:10Z2008-03-19T18:42:10Zxantoshi, i'm new to writing image j plugins and i need help. i'm trying to create a plugin that will allow the user to select a region on the image and then perform a pixel calculations on the selected region. please can i get some help or examples THANKS!
<br><br><br><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-16135561Re: ij plugins usage in my application2008-03-18T18:40:46Z2008-03-18T18:40:46ZJarek Sacha-2George Mast wrote:
<br>> Hello,
<br>>
<br>> I want to use a plugin in my application. How do I do it?
<br>What type of plugins? What types of applications?
<br>>
<br>> Thanks,
<br>>
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Hello,<BR>
<BR>
I want to use a plugin in my application. How do I do it?<BR>
<BR>
Thanks,<BR>
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<br><a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-14829504Source code repository migrated from CVS to SVN2008-01-14T20:15:38Z2008-01-14T20:15:38ZJarek Sacha-2Finally I was able to migrate source code from CVS to SVN. The full
<br>commit history is preserved. It was not possible to convert CVS Branches
<br>and Tags, though that may not be of much importance.
<br><br>The SVN repository has standard structure with trunk, branches, and
<br>tags. Most of the time you want to check out only trunk or one of its
<br>subdirectories. As URL of the repository use:
<br><a href="https://ij-plugins.svn.sourceforge.net/svnroot/ij-plugins/trunk" target="_top" rel="nofollow">https://ij-plugins.svn.sourceforge.net/svnroot/ij-plugins/trunk</a><br><br>All members of the ij-plugins project have write access to the repository.
<br><br>The repository can be browsed online at
<br><a href="http://ij-plugins.svn.sourceforge.net/viewvc/ij-plugins/trunk/" target="_top" rel="nofollow">http://ij-plugins.svn.sourceforge.net/viewvc/ij-plugins/trunk/</a><br><br>Jarek
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<br><a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-14184705Problem installing vtk filters2007-12-05T17:32:22Z2007-12-05T17:32:22ZalinevesDear participants
<br><br>After following the known steps for installing vtk plugins in imagej using the compiled binaries from vtk I get the following error message after trying to run the VTK version:
<br><br>VTK native library load failed
<br>Caused by; java.lang.UnsatisfiedLinkError: no vtkCommonJava in java.library.path
<br>Stack trace:
<br>net.sf.ij_plugins.vtk.utils.VTKLoader.loadAll(VTKLoader.java 112)
<br>net.sf.ij_plugins.vtk.utils.VTKVersionPlugin.run(VTKVersionPlugin.java:40)
<br>ij.IJ.runUserPlugin(IJ.java:158)
<br>ij.IJ.runPlugin(IJ.java:124)
<br>ij.Executer.runCommand(Executer.java:95)
<br>ij.Executer.run(Executer.java:49)
<br>java.lang.Thread.run(Thread.java:619)
<br><br>Thanks in advance<p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-1368511016 colours2007-11-10T11:28:53Z2007-11-10T11:28:53Zjuan pascual pinazo<html>
<head>
</head>
<body class='hmmessage'>
I have seen this code:<BR>
<BR><FONT size=2>
<P align=left></FONT><B><FONT color=#7f0055 size=2>int</B></FONT><FONT size=2> rgb332(</FONT><B><FONT color=#7f0055 size=2>byte</B></FONT><FONT size=2>[] reds, </FONT><B><FONT color=#7f0055 size=2>byte</B></FONT><FONT size=2>[] greens, </FONT><B><FONT color=#7f0055 size=2>byte</B></FONT><FONT size=2>[] blues) {</P>
<P align=left>//Color c;</P>
<P align=left></FONT><B><FONT color=#7f0055 size=2>for</B></FONT><FONT size=2> (</FONT><B><FONT color=#7f0055 size=2>int</B></FONT><FONT size=2> i=0; i<256; i++) {</P>
<P align=left>reds[i] = (</FONT><B><FONT color=#7f0055 size=2>byte</B></FONT><FONT size=2>)(i&0xe0);</P>
<P align=left>greens[i] = (</FONT><B><FONT color=#7f0055 size=2>byte</B></FONT><FONT size=2>)((i<<3)&0xe0);</P>
<P align=left>blues[i] = (</FONT><B><FONT color=#7f0055 size=2>byte</B></FONT><FONT size=2>)((i<<6)&0xc0);</P>
<P align=left>}</P>
<P align=left></FONT><B><FONT color=#7f0055 size=2>return</B></FONT><FONT size=2> 256;</P>
}<BR>
</FONT> <BR>
Does anyone knows how to modified so I can use anothers LUTS, I would like the 16 colours ramp.<BR>
I know that I can download the LUTs but i can´t see the code of them.¿ IS there any place where <BR>
I can see the code?<BR>
Thank you. <BR>
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<br><a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-13652830Move single ROIs within a selection2007-11-08T10:26:14Z2007-11-08T10:26:14ZTomteHi!
<br><br>I make images of a preparation during a physiological experiment and of the same preparation after immunostaining (IS). Now i select ROIs (using ImageJ's "brush selection" tool) in the IS images and save this selection with the ROI manager and map it to the data of experiment. Most of the ROIs match quite well but in some cases some of the ROIs are shifted away from their targets (i guess that some movement of tissue is unavoidable during the fixation procedure). This shift is small (a few pixels) and it would be fantastic if i could simply grasp the respective ROIs and move them over the designated spots. But i don't know how to do this (if possible at all).
<br><br>Does anybody have an idea how to do this?
<br><br>Regards,
<br>Thomas<p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-13492195K medias code2007-10-30T10:26:49Z2007-10-30T10:26:49Zjuan pascual pinazo<html>
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<body class='hmmessage'>
I sorry about my english because maybe is not very good.<BR>
<BR>
I´ve downloaded de last ij plugins toolkit and I would like to modify somethings of the K-medias code but I don´t know how to do it because it is a .jar file.<BR>
I´ve downloaded the source code ij plugins toolkit but when I try to edit the Kmedias.java file with ImageJ and press the compile and run option I have this error:<BR>
<BR>
Note: sun.tools.javac.Main has been deprecated.<BR>C:\Archivos de programa\ImageJ\plugins\src\net\sf\ij_plugins\clustering\KMeans.java:27: Class net.sf.ij_plugins.multiband.VectorProcessor not found in import.<BR>import net.sf.ij_plugins.multiband.VectorProcessor;<BR> ^<BR>1 error, 1 warning<BR>
<BR>
Does anybody know how to fix it?Thank you----<BR><br /><hr />Express yourself instantly with MSN Messenger! <a href='http://clk.atdmt.com/AVE/go/onm00200471ave/direct/01/' target='_new' rel="nofollow">MSN Messenger</a></body>
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<br>Ij-plugins-users mailing list
<br><a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=13492195&i=0" target="_top" rel="nofollow">Ij-plugins-users@...</a>
<br><a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-13115614Creating ipk for the Zaurus2007-10-09T07:29:00Z2007-10-09T07:29:00ZStephen MoreI see someone provides a Zaurus .ipk
<br><br>Is this using an automated tool like ant or maven to create this ipk ?
<br><br><br>-Thanks
<br>Steve More
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<br><a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-12797178Distribution analysis2007-09-20T02:34:25Z2007-09-20T02:34:25Zmarco.spinazziI would like to ask if anybody knows if there is a plugin or different
<br>softwares to analyse the pattern of distribution of cell particles (ex.
<br>mitochondria) inside a cell, if that is homogeneous or if there are areas
<br>of aggregation opposed to areas relatively devoid of cell particles.
<br>Thanks,
<br><br>Marco Spinazzi
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<br>Ij-plugins-users mailing list
<br><a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=12797178&i=0" target="_top" rel="nofollow">Ij-plugins-users@...</a>
<br><a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-12025911Changing color of ROI highlight in 'Show All' mode2007-08-06T17:05:47Z2007-08-06T17:05:47ZganeshjothikumarHi All
<br>
<br> I have an image and I draw a set of ROIs over it and add them to ROI Manager. All this I am doing through a plugin programmatically. Now when I click 'Show All' in the ROI Maneger panel, all the ROIs are highlighted with green color. Is there a way to change this color. I want to change the color in which the ROIs are highlighted when 'Show All' button is pressed in ROI Manager panel. Can anybody help me out in this.
<br>
<br>Thanks in advance
<br>ganesh<p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-12003910Drag and Drop Oval ROI2007-08-05T05:30:08Z2007-08-05T05:30:08ZganeshjothikumarHi All
<br>
<br> Can somebody help me on a plugin to drag an already existing Oval ROI (which is filled with a color)
<br> on an image from the current location to someother location (along with the color) using the
<br> mouse..
<br>
<br>Current code I have to dram a OvalRoi on the image is as follows...
<br>
<br> RoiManager roi_mgr = new RoiManager();
<br> ImagePlus imp = WindowManager.getCurrentImage();
<br> ip = imp.getProcessor();
<br> Roi roi = new OvalRoi(10,10,100,100);
<br> ip.setColor(new Color(13,14,23));
<br> ip.setMask(roi.getMask());
<br> ip.setRoi(roi.getBoundingRect());
<br> imp.setRoi(roi);
<br> roi_mgr.runCommand("Add");
<br> ip.fill(ip.getMask());
<br> imp.updateAndDraw();
<br>
<br> I tried something in the mouse dragged method. But as not sucessful.
<br> It would be of gr8 help if somebody can help me
<br>
<br> Thanks in advance
<br>ganesh
<br><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-10879233vtkFixedPointVolumeRayCastMapper / JVM crash2007-05-30T12:02:18Z2007-05-30T12:02:18ZK. FisherHi,
<br><br>I have a question about vtkFixedPointVolumeRayCastMapper. This RayCastMapper is included in the Java wrappings, but unfortunately it crashes on execution. Some time someone already asked about it, but there was no reply so far and I decided to open a new thread.
<br><br>Playing around with vtkFixedPointVolumeRayCastMapper in C++ makes me think it is much faster (compared to vtkVolumeRayCastMapper) and also the rendering quality seems to be better.
<br><br>Does anyone know the reason for the JVM crash and a possible solution? (TextureMapper3D is not an option for me)
<br><br><br>Greetings
<br>Kai
<br><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-9292614VTK 5.0.22007-03-03T19:42:51Z2007-03-03T19:42:51ZJarek Sacha-2VTK binaries v.5.0.2 with Java wrappers for Windows available for download.
<br><br>Jarek
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<br><a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-9277701Plugin Lane detection2007-03-02T13:26:09Z2007-03-02T13:26:09ZCyberAngelhi everybody
<br>I should make a plugin that realize lane detection. please you give me some suggestion, a hand...send me some example... please<p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-8212430Re: colour volume rendering updates...2007-01-07T20:05:19Z2007-01-07T20:05:19ZJarek Sacha-2keesh wrote:
<br>> My questions are:
<br>> How difficult would it be to update ij-VTK to utilize VTK 5.0.2?
<br>>
<br>I did test ij-VTK with 5.0.2 and Java 6 back in September. As far as I
<br>can tell everything worked fine. I can build binaries for Windows from
<br>most current 5.0.2 source and upload under " "VTK binaries" section.
<div class='shrinkable-quote'><br>> Also, in the VolumeRenderingModel constructor, I will need to know
<br>> the number of scalar components from the imageData in order to
<br>> instantiate the specific color volume rendering objects.
<br>> However, setImageData is called "too late" for this purpose.
<br>> I really need to interogate the imageData in the VolumeRenderingModel
<br>> constructor
<br>> which is called from the VolumeRenderingView constructor.
<br>> class VolumeRendringPlugin
<br>> ...
<br>> public void run(final String s) {
<br>> ...
<br>> final VolumeRenderingView view = new VolumeRenderingView();
<br>> view.setImageData(inputImageData);
<br>>
</div>Making VolumeRenderingModel object depended on a specific type of
<br>imageData through the constructor would break IImageRenderingModel
<br>interface. This interface is also used by SurfaceRenderingModel. Could
<br>you explain what specific volume rendering you need to initialize?
<br>(sample code?) There may be a way to recreate part of the pipeline in
<br>setImageData to match imageData. Send the code that explains how you
<br>want to modify the constructor (what volume rendering you need to
<br>initialize) may be I would be able to figure out how to dynamically do
<br>it in setImageData.
<br><br>Jarek
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<br>Ij-plugins-users mailing list
<br><a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8212430&i=0" target="_top" rel="nofollow">Ij-plugins-users@...</a>
<br><a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-8209651colour volume rendering updates...2007-01-07T14:07:36Z2007-01-07T14:07:36ZkeeshJarek,
<br><br>I'm making progress on colour volume rendering using
<br>"TestFixedPointRayCasterNearest.tcl" as a template for experimentation.
<br>Please see attached volume rendered brain w/ red and green areas
<br>indicating pathologies.
<br><br>My questions are:
<br>How difficult would it be to update ij-VTK to utilize VTK 5.0.2?
<br><br>Also, in the VolumeRenderingModel constructor, I will need to know
<br>the number of scalar components from the imageData in order to
<br>instantiate the specific color volume rendering objects.
<br>However, setImageData is called "too late" for this purpose.
<br>I really need to interogate the imageData in the VolumeRenderingModel
<br>constructor
<br>which is called from the VolumeRenderingView constructor.
<br>class VolumeRendringPlugin
<br>...
<br> public void run(final String s) {
<br>...
<br> final VolumeRenderingView view = new VolumeRenderingView();
<br> view.setImageData(inputImageData);
<br><br>thx e.-
<br>===
<br><br>----- Original Message -----
<br>From: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=0" target="_top" rel="nofollow">ij-plugins-users-request@...</a>>
<br>To: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=1" target="_top" rel="nofollow">ij-plugins-users@...</a>>
<br>Sent: Friday, December 15, 2006 9:20 PM
<br>Subject: Ij-plugins-users Digest, Vol 6, Issue 1
<br><br><div class='shrinkable-quote'><div class='shrinkable-quote'><br>> Send Ij-plugins-users mailing list submissions to
<br>> <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=2" target="_top" rel="nofollow">ij-plugins-users@...</a>
<br>>
<br>> To subscribe or unsubscribe via the World Wide Web, visit
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<br>>
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<br>>
<br>> When replying, please edit your Subject line so it is more specific
<br>> than "Re: Contents of Ij-plugins-users digest..."
<br>>
<br>>
<br>> Today's Topics:
<br>>
<br>> 1. Full Color Volume Rendering (keesh)
<br>> 2. Full color volume rendering... (keesh)
<br>> 3. Fw: Full color volume rendering... (keesh)
<br>> 4. test (keesh)
<br>>
<br>>
<br>> ----------------------------------------------------------------------
<br>>
<br>> Message: 1
<br>> Date: Sun, 26 Nov 2006 19:28:58 -0600
<br>> From: "keesh" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=5" target="_top" rel="nofollow">keesh@...</a>>
<br>> Subject: [Ij-plugins-users] Full Color Volume Rendering
<br>> To: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=6" target="_top" rel="nofollow">ij-plugins-users@...</a>>
<br>> Message-ID: <003301c711c3$694b35a0$6401a8c0@keeshhomedesk3>
<br>> Content-Type: text/plain; charset="iso-8859-1"
<br>>
<br>> ij-VTK Lurkers,
<br>>
<br>> Thanks to Jarek for finessing my "proof of concept" RGB
<br>> VtkEncoder/VtkDecoder contribution
<br>> into a form more robust.
<br>>
<br>> I've been tryin' to get full color volume rendering working under ij-VTK.
<br>> I tried posting to the VTK users mailing list, but received NO response.
<br>>
<br>> Although, full color volume rendering in VTK seems unintegrated,
<br>> I was led to the "vtkFixedPointVolumeRayCastMapper" class by some older
<br>> posts.
<br>> This class supposedly supports color volume rendering, but appears to
</div>cause
<div class='shrinkable-quote'><br>> JVM crashes.
<br>>
<br>> I will probably try VTK's lone "vtkFixedPointVolumeRayCastMapper" test
<br>> example next (maybe under TCL)
<br>> e.-
<br>> ===
<br>>
<br>> ----- Original Message -----
<br>> From: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=7" target="_top" rel="nofollow">ij-plugins-users-request@...</a>>
<br>> To: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=8" target="_top" rel="nofollow">ij-plugins-users@...</a>>
<br>> Sent: Wednesday, September 27, 2006 5:41 PM
<br>> Subject: Ij-plugins-users Digest, Vol 3, Issue 5
<br>>
<br>>
<br>> > Send Ij-plugins-users mailing list submissions to
<br>> > <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=9" target="_top" rel="nofollow">ij-plugins-users@...</a>
<br>> >
<br>> > To subscribe or unsubscribe via the World Wide Web, visit
<br>> > <a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br>> > or, via email, send a message with subject or body 'help' to
<br>> > <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=10" target="_top" rel="nofollow">ij-plugins-users-request@...</a>
<br>> >
<br>> > You can reach the person managing the list at
<br>> > <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=11" target="_top" rel="nofollow">ij-plugins-users-owner@...</a>
<br>> >
<br>> > When replying, please edit your Subject line so it is more specific
<br>> > than "Re: Contents of Ij-plugins-users digest..."
<br>> >
<br>> >
<br>> > Today's Topics:
<br>> >
<br>> > 1. Serializing/deserializing VTK classes (shu gao)
<br>> > 2. Re: ij-VTK Server Timeout (keesh)
<br>> >
<br>> >
<br>> > ----------------------------------------------------------------------
<br>> >
<br>> > Message: 1
<br>> > Date: Wed, 27 Sep 2006 17:11:20 +0000
<br>> > From: "shu gao" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=12" target="_top" rel="nofollow">gshu418@...</a>>
<br>> > Subject: [Ij-plugins-users] Serializing/deserializing VTK classes
<br>> > To: <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=13" target="_top" rel="nofollow">ij-plugins-users@...</a>
<br>> > Message-ID: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=14" target="_top" rel="nofollow">BAY107-F212DA44C9EE1A838EEB9B3FB1A0@...</a>>
<br>> > Content-Type: text/plain; format=flowed
<br>> >
<br>> > Dear all,
<br>> > I am developing web service using VTK. I met some difficulties in
<br>> > serializing /deserialing VTK objects. As an example,I modified
<br>> Medical1.java
<br>> > ,which is in the VTK-Examples,as a application in server side.So the
<br>> return
<br>> > of the web service is class Medical1.I got an
<br>> > Exception--java.io.NotserializableException:vtk.vtkLight.And I also
</div>found
<div class='shrinkable-quote'><br>> > the other classes,such as vtkVolume16Reader,vtkContourFilter, and so on,
<br>> all
<br>> > seem not to be serialized.How do I
<br>> > serialize /deserialze VTK objects? Any suggestion would be helpful and
<br>> many
<br>> > thanks in advance.
<br>> >
<br>> > Kind regards,
<br>> > Gao Shu
<br>> >
<br>> >
<br>> >
<br>> >
<br>> > >From: "keesh" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=15" target="_top" rel="nofollow">keesh@...</a>>
<br>> > >To: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=16" target="_top" rel="nofollow">ij-plugins-users@...</a>>
<br>> > >Subject: [Ij-plugins-users] Full Color Volume Rendering?
<br>> > >Date: Sun, 24 Sep 2006 17:17:17 -0500
<br>> > >
<br>> > >Jarek,
<br>> > >
<br>> > >I want to experiment with full color (RGB) volume rendering in ij-VTK.
<br>> > >As I started to modify/test the source code, I ran into an exception in
<br>> > >VtkEncoder
<br>> > >(does not support RGB).
<br>> > >I do not seem to have the source code for this "io" package?
<br>> > >Would it be difficult to add support for RGB images into VtkEncoder?
<br>> > >I already made up a simple RGB test stack in Image/J and I'm motivated
<br>> > >to add RGB support into ij-VTK.
<br>> > >
<br>> > >note to self
<br>> > >---
<br>> > >Try a late-based vtkImageData::GetNumberofScalarComponents test.
<br>> > >Try either applying no color transder function or a linear one on each
<br>> > >channel.
<br>> > >
<br>> > >******************************************
<br>> > >keesh
<br>> > >Software Development Engineer
<br>> > >(Alchemist of the Millennium)
<br>> > >
<br>> > >Contact:
<br>> > ><a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=17" target="_top" rel="nofollow">keesh@...</a>
<br>> > >******************************************
<br>> > >
<br>> > >Work Life Plan:
<br>> > >To improve the quality of life for all mankind through better pattern
<br>> > >recognition techniques.
<br>> > >
<br>> > >Home Life Plan:
<br>> > >Married, but happy. Three bright beacons light my way.
<br>> >
<br>> >
<br>> >
<br>>-------------------------------------------------------------------------
<br>> > >Take Surveys. Earn Cash. Influence the Future of IT
<br>> > >Join SourceForge.net's Techsay panel and you'll get the chance to share
<br>> > >your
<br>> > >opinions on IT & business topics through brief surveys -- and earn cash
<br>> >
<br>><a href="http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV" target="_top" rel="nofollow">http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV</a><br>> >
<br>> >
<br>> > >_______________________________________________
<br>> > >Ij-plugins-users mailing list
<br>> > ><a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=18" target="_top" rel="nofollow">Ij-plugins-users@...</a>
<br>> > ><a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br>> >
<br>> > _________________________________________________________________
<br>> > Windows LiveT Messenger has arrived. Click here to download it for free!
<br>> > <a href="http://imagine-msn.com/messenger/launch80/?locale=en-gb" target="_top" rel="nofollow">http://imagine-msn.com/messenger/launch80/?locale=en-gb</a><br>> >
<br>> >
<br>> >
<br>> >
<br>> > ------------------------------
<br>> >
<br>> > Message: 2
<br>> > Date: Wed, 27 Sep 2006 15:24:55 -0500
<br>> > From: "keesh" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=19" target="_top" rel="nofollow">keesh@...</a>>
<br>> > Subject: Re: [Ij-plugins-users] ij-VTK Server Timeout
<br>> > To: "Jarek Sacha" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=20" target="_top" rel="nofollow">jsacha@...</a>>
<br>> > Cc: <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=21" target="_top" rel="nofollow">Maximilian.Loy@...</a>, <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=22" target="_top" rel="nofollow">ij-plugins-users@...</a>,
<br>> > <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=23" target="_top" rel="nofollow">heiko.gleitsmann@...</a>, <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=24" target="_top" rel="nofollow">farrokhi@...</a>
<br>> > Message-ID: <003a01c6e272$ffd4c0c0$6401a8c0@keeshhomedesk3>
<br>> > Content-Type: text/plain; charset="iso-8859-1"
<br>> >
<br>> > Jarek,
<br>> >
<br>> > Regarding CVS, nothing has changed on my end either.
<br>> > Its been so long that I don't recall how I pulled down the initial
</div>ij-VTK
<div class='shrinkable-quote'><br>> > module?
<br>> >
<br>> > When did the CVS server change to ij-plugins.cvs.sourceforge.net from
<br>> > cvs.sourceforge.net
<br>> > (was there an e-mail sent out)?
<br>> >
<br>> > Do I have both update and checkin permissions on the main ij-plugins
<br>> > (toolkit) module?
<br>> > e.-
<br>> > ===
<br>> >
<br>> >
<br>> > ----- Original Message -----
<br>> > From: "Jarek Sacha" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=25" target="_top" rel="nofollow">jsacha@...</a>>
<br>> > To: "keesh" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=26" target="_top" rel="nofollow">keesh@...</a>>
<br>> > Cc: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=27" target="_top" rel="nofollow">ij-plugins-users@...</a>>;
</div><<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=28" target="_top" rel="nofollow">Maximilian.Loy@...</a>>;
<div class='shrinkable-quote'><br>> > <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=29" target="_top" rel="nofollow">heiko.gleitsmann@...</a>>; <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=30" target="_top" rel="nofollow">farrokhi@...</a>>
<br>> > Sent: Sunday, September 24, 2006 10:19 PM
<br>> > Subject: Re: [Ij-plugins-users] ij-VTK Server Timeout
<br>> >
<br>> >
<br>> > > I a bit confused as to you error message, not sure where it start and
<br>> > > where ends.
<br>> > >
<br>> > > Part of it looks normal (lines c to m and very beginning of n - server
<br>> > > ssh key is not in you cache).
<br>> > >
<br>> > > I am have no idea where the error from line a is coming from, as looks
<br>> > > as if some security flags are not set right. I did not change anything
<br>> > > for years.
<br>> > >
<br>> > > Line b may be the key, it looks as if you are trying to create a new
<br>> > > 'ij-VTK' module in the repository. This is sure to fail as the module
<br>> > > already exists. Other errors may be just a consequence of this one.
</div>You
<br>> > > may be issuing a wrong CVS command.
<br>> > >
<br>> > > Jarek
<br>> > >
<br>> > > keesh wrote:
<br>> > > > Jarek,
<br>> > > >
<br>> > > > I performed a basic test with RSA auth. via SSH which still appears
</div>to
<br>> > work
<br>> > > > fine.
<br>> > > >
<br>> > > > When I performed a simple text file checkin on a clean new project
<br>> dir.
<br>> > I
<br>> > > > got the following error.
<br>> > > > What else has changed besides "ij-plugins.cvs.sourceforge.net"
<br>> > > > as my previous CVS setup was working fine? Do I need new
<br>permissions
<br>> > for
<br>> > > > ij-VTK?
<br>> > > > a.. Failed to checkout CVSROOT/cvswrappers. Permission to checkout
<br>> > this
<br>> > > > file is necessary to configure CVS to recognize certain binary file
<br>> > types.
<br>> > > > b.. Failed to create the module "ij-VTK" in the CVS repository.
<br>CVS
<div class='shrinkable-quote'><div class='shrinkable-quote'><br>> > > > returned the following error:
<br>> > > > c.. The servers host key is not cached in the registry. You
<br>> > > > d.. have no guarantee that the server is the computer you
<br>> > > > e.. think it is.
<br>> > > > f.. The servers rsa2 key fingerprint is:
<br>> > > > g.. ssh-rsa 1024 13:f1:65:c3:6c:b7:7e:a5:f0:f3:f5:19:f4:42:9c:4a
<br>> > > > h.. If you trust this host, enter "y" to add the key to
<br>> > > > i.. PuTTYs cache and carry on connecting.
<br>> > > > j.. If you want to carry on connecting just once, without
<br>> > > > k.. adding the key to the cache, enter "n".
<br>> > > > l.. If you do not trust this host, press Return to abandon the
<br>> > > > m.. connection.
<br>> > > > n.. Store key in cache? (y/n) unrecognized request `responses ok
<br>> error
<br>> > > > Valid-requests Checked-in New-entry Checksum Copy-file Updated
</div>Created
<div class='shrinkable-quote'><br>> > > > Update-existing Merged Patched Rcs-diff Mode Mod-time Removed
<br>> > Remove-entry
<br>> > > > Set-static-directory Clear-static-directory Set-sticky Clear-sticky
<br>> > Template
<br>> > > > Notified Module-expansion Wrapper-rcsOption M Mbinary E F MT
<br>> > > > Do the following values look OK to you?
<br>> > > >
<br>> > > >>> team.ActiveVCS[0]=CVS
<br>> > > >>> team.CvsAccessMethod[0]=ext
<br>> > > >>> team.CvsBranch[0]=<main>
<br>> > > >>> team.CvsModule[0]=ij-VTK
<br>> > > >>>
<br>> > > >>>
<br>> > > >
<br>> >
</div>team.CvsRemoteShell[0]=J:\Borland\JBuilder2005\thirdparty\putty\plink.exe
<div class='shrinkable-quote'><br>> > > >
<br>> > > >>> team.CvsRepository[0]=/cvsroot/ij-plugins
<br>> > > >>> team.CvsServer[0]=ij-plugins.cvs.sourceforge.net
<br>> > > >>> team.CvsUsername[0]=keesh0
<br>> > > >>>
<br>> > > >
<br>> > > > e.-
<br>> > > > ===
<br>> > > >
<br>> > > > ----- Original Message -----
<br>> > > > From: "Jarek Sacha" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=31" target="_top" rel="nofollow">jsacha@...</a>>
<br>> > > > To: "keesh" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=32" target="_top" rel="nofollow">keesh@...</a>>
<br>> > > > Cc: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=33" target="_top" rel="nofollow">ij-plugins-users@...</a>>;
<br>> > <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=34" target="_top" rel="nofollow">Maximilian.Loy@...</a>>;
<br>> > > > "Farrokhi, Shawn" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=35" target="_top" rel="nofollow">farrokhi@...</a>>;
<br>> <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=36" target="_top" rel="nofollow">heiko.gleitsmann@...</a>>
<br>> > > > Sent: Sunday, September 17, 2006 9:45 PM
<br>> > > > Subject: Re: [Ij-plugins-users] ij-VTK Server Timeout
<br>> > > >
<br>> > > >
<br>> > > >
<br>> > > >> Keesh:
<br>> > > >>
<br>> > > >> I am not familiar it JBuilder setup. Did you try some other CVS
<br>> client?
<br>> > > >> Tested again to make sure with SmartCVS, IDEA, and NetBeans, I have
<br>> no
<br>> > > >> problem accessing ij-plugins CVS.
<br>> > > >> Did you try to check out the project in a new directory to make
</div>sure
<div class='shrinkable-quote'><br>> > > >> that you existing setup did not get corrupted? Can you access other
<br>> > > >> projects' CVS on SourceForge?
<br>> > > >>
<br>> > > >> Jarek
<br>> > > >>
<br>> > > >> keesh wrote:
<br>> > > >>
<br>> > > >>> Jarek,
<br>> > > >>>
<br>> > > >>> Here are my updated Borland CVS settings...
<br>> > > >>> team.ActiveVCS[0]=CVS
<br>> > > >>>
<br>> > > >>> team.CvsAccessMethod[0]=ext
<br>> > > >>>
<br>> > > >>> team.CvsAutosaveEnabled[0]=1
<br>> > > >>>
<br>> > > >>> team.CvsBranch[0]=<main>
<br>> > > >>>
<br>> > > >>> team.CvsModule[0]=ij-VTK
<br>> > > >>>
<br>> > > >>> team.CvsPruneEmptyDirs[0]=1
<br>> > > >>>
<br>> > > >>>
<br>> > > >>>
<br>> > > >
<br>> >
</div>team.CvsRemoteShell[0]=J:\Borland\JBuilder2005\thirdparty\putty\plink.exe
<div class='shrinkable-quote'><br>> > > >
<br>> > > >>> team.CvsRepository[0]=/cvsroot/ij-plugins
<br>> > > >>>
<br>> > > >>> team.CvsServer[0]=ij-plugins.cvs.sourceforge.net
<br>> > > >>>
<br>> > > >>> team.CvsShowConsole[0]=1
<br>> > > >>>
<br>> > > >>> team.CvsUsername[0]=keesh0
<br>> > > >>>
<br>> > > >>> team.lastScanned[0]=1158527699298
<br>> > > >>>
<br>> > > >>>
<br>> > > >>>
<br>> > > >
<br>> >
<br>>
</div>team.prunedDirectories[0]=src/cxx;src/java/net/sf/ij_plugins/utils;src/java/
<br>> > > >
<br>> > > >
<br>> >
<br>>
</div>net/sf/ij_plugins/vtk/prototype/surfacerender;src/java/net/sf/ij_plugins/vtk
<div class='shrinkable-quote'><div class='shrinkable-quote'><br>> > > >
<br>> > > >>> /prototype/volumerender
<br>> > > >>>
<br>> > > >>> Any ideas why CVS still appears to be broken?
<br>> > > >>> e.-
<br>> > > >>> ===
<br>> > > >>>
<br>> > > >>> ----- Original Message -----
<br>> > > >>> From: "keesh" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=37" target="_top" rel="nofollow">keesh@...</a>>
<br>> > > >>> To: "keesh" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=38" target="_top" rel="nofollow">keesh@...</a>>
<br>> > > >>> Sent: Monday, September 11, 2006 8:13 PM
<br>> > > >>> Subject: Fw: [Ij-plugins-users] ij-VTK Server Timeout
<br>> > > >>>
<br>> > > >>>
<br>> > > >>>
<br>> > > >>>
<br>> > > >>>> Developer CVS Access via SSH
<br>> > > >>>>
<br>> > > >>>> Only project developers can access the CVS tree via this method.
</div>A
<br>> > SSH
<br>> > > >>>> client must be installed on your client machine. Substitute
<br>> > modulename
<br>> > > >>>>
<br>> > > > and
<br>> > > >
<br>> > > >>>> developername with the proper values. Enter your site password
</div>when
<div class='shrinkable-quote'><div class='shrinkable-quote'><br>> > > >>>> prompted.
<br>> > > >>>>
<br>> > > >>>> Project administrators may limit CVS access to this repository
<br>> using
<br>> > > >>>> cvs_acls or the CVS access member permissions option. Developers
<br>> may
<br>> > > >>>>
<br>> > > >>>>
<br>> > > >>> verify
<br>> > > >>>
<br>> > > >>>
<br>> > > >>>> their CVS access status on the admin page for this project.
<br>> > > >>>>
<br>> > > >>>> A significant amount of information about project CVS services
</div>may
<br>> be
<br>> > > >>>>
<br>> > > >>>>
<br>> > > >>> found
<br>> > > >>>
<br>> > > >>>
<br>> > > >>>> in our "CVS (Version Control for Source Code)".
<br>> > > >>>>
<br>> > > >>>> Developers may also make use of shared SSH keys for
</div>authentication.
<br>> > > >>>>
<br>> > > >>>> export CVS_RSH=ssh
<br>> > > >>>>
<br>> > > >>>>
<br>> > > >>>>
<br>> > > >>>>
<br>> > > >
<br>> >
<br>>
<br>cvs -z3 -d:ext:<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=39" target="_top" rel="nofollow">developername@...</a>:/cvsroot/ij-plug
<br>> > > >
<br>> > > >>>> ins co -P modulename
<br>> > > >>>>
<br>> > > >>>> NOTE: UNIX file and directory names are case sensitive. The path
<br>to
<br>> > the
<br>> > > >>>> project CVSROOT must be specified using lowercase characters
<br>(i.e.
<div class='shrinkable-quote'><div class='shrinkable-quote'><br>> > > >>>> /cvsroot/ij-plugins)
<br>> > > >>>>
<br>> > > >>>> ----- Original Message -----
<br>> > > >>>> From: "Jarek Sacha" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=40" target="_top" rel="nofollow">jarek@...</a>>
<br>> > > >>>> To: "keesh" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=41" target="_top" rel="nofollow">keesh@...</a>>
<br>> > > >>>> Cc: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=42" target="_top" rel="nofollow">ij-plugins-users@...</a>>;
<br>> > > >>>>
<br>> > > > <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=43" target="_top" rel="nofollow">Maximilian.Loy@...</a>>;
<br>> > > >
<br>> > > >>>> "Farrokhi, Shawn" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=44" target="_top" rel="nofollow">farrokhi@...</a>>;
<br>> > <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=45" target="_top" rel="nofollow">heiko.gleitsmann@...</a>>
<br>> > > >>>> Sent: Sunday, September 10, 2006 9:38 PM
<br>> > > >>>> Subject: Re: [Ij-plugins-users] ij-VTK Server Timeout
<br>> > > >>>>
<br>> > > >>>>
<br>> > > >>>>
<br>> > > >>>>
<br>> > > >>>>> keesh wrote:
<br>> > > >>>>>
<br>> > > >>>>>
<br>> > > >>>>>> But, I was unable to pull down the latest ij-VTK source code
</div>from
<div class='shrinkable-quote'><br>> > > >>>>>> Sourceforge
<br>> > > >>>>>> using CVS (timeout errors).
<br>> > > >>>>>> Have any repository paths changed?
<br>> > > >>>>>>
<br>> > > >>>>>>
<br>> > > >>>>> SourceForge was doing some changes to CVS servers over past
<br>> months.
<br>> > I
<br>> > > >>>>>
<br>> > > > am
<br>> > > >
<br>> > > >>>>> not sure what and when changed, I updated my setup a while ago.
<br>> CVS
<br>> > > >>>>>
<br>> > > > info
<br>> > > >
<br>> > > >>>>> at project page:
<br>> > > >>>>> <a href="http://sourceforge.net/cvs/?group_id=44711" target="_top" rel="nofollow">http://sourceforge.net/cvs/?group_id=44711</a><br>> > > >>>>> has correct CVS configuration information (as far as I can
</div>tell).
<div class='shrinkable-quote'><br>> > > >>>>>
<br>> > > >>>>> Jarek
<br>> > > >>>>>
<br>> > > >>>>>
<br>> > > >>>>>
<br>> > > >>>>>
<br>> > > >>>>
<br>> > > >>>
<br>> > > >>>
<br>> > > >>>
<br>> > > >>>
<br>> > > >>
<br>> > > >>
<br>> > > >
<br>> > > >
<br>> > > >
<br>> > >
<br>> >
<br>>
<br>> -------------------------------------------------------------------------
<br>> > > > Take Surveys. Earn Cash. Influence the Future of IT
<br>> > > > Join SourceForge.net's Techsay panel and you'll get the chance to
<br>> share
<br>> > your
<br>> > > > opinions on IT & business topics through brief surveys -- and earn
<br>> cash
<br>> > > >
<br>> >
</div><a href="http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV" target="_top" rel="nofollow">http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV</a><div class='shrinkable-quote'><br>> > > > _______________________________________________
<br>> > > > Ij-plugins-users mailing list
<br>> > > > <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=46" target="_top" rel="nofollow">Ij-plugins-users@...</a>
<br>> > > > <a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br>> > > >
<br>> > > >
<br>> > > >
<br>> > >
<br>> > >
<br>> > >
<br>> >
<br>> >
<br>> >
<br>> >
<br>> >
<br>> > ------------------------------
<br>> >
<br>>
<br>> -------------------------------------------------------------------------
<br>> > Take Surveys. Earn Cash. Influence the Future of IT
<br>> > Join SourceForge.net's Techsay panel and you'll get the chance to share
<br>> your
<br>> > opinions on IT & business topics through brief surveys -- and earn cash
<br>> >
</div><a href="http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV" target="_top" rel="nofollow">http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV</a><div class='shrinkable-quote'><br>> >
<br>> > ------------------------------
<br>> >
<br>> > _______________________________________________
<br>> > Ij-plugins-users mailing list
<br>> > <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=47" target="_top" rel="nofollow">Ij-plugins-users@...</a>
<br>> > <a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br>> >
<br>> >
<br>> > End of Ij-plugins-users Digest, Vol 3, Issue 5
<br>> > **********************************************
<br>> >
<br>> >
<br>>
<br>>
<br>>
<br>>
<br>>
<br>> ------------------------------
<br>>
<br>> Message: 2
<br>> Date: Tue, 28 Nov 2006 20:50:13 -0600
<br>> From: "keesh" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=48" target="_top" rel="nofollow">keesh@...</a>>
<br>> Subject: [Ij-plugins-users] Full color volume rendering...
<br>> To: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=49" target="_top" rel="nofollow">ij-plugins-users@...</a>>
<br>> Message-ID: <006101c71361$1810fb30$6401a8c0@keeshhomedesk3>
<br>> Content-Type: text/plain; charset="iso-8859-1"
<br>>
<br>> ij-VTK Lurkers,
<br>>
<br>> Thanks to Jarek for finessing my "proof of concept" RGB
</div>VtkEncoder/VtkDecoder contribution
<br>> into a form more robust.
<br>>
<br>> I've been tryin' to get full color volume rendering working under ij-VTK.
<br>> I tried posting to the vtk users mailing list, but received no response.
<br>>
<br>> Although, full color volume rendering in VTK seems crude,
<br>> I was led to the "vtkFixedPointVolumeRayCastMapper" class by some older
</div>posts.
<br>> This class supposedly supports color volume rendering, but appears to
<br>cause JVM crashes.
<div class='shrinkable-quote'><div class='shrinkable-quote'><br>>
<br>> I will probably try VTK's test example next.
<br>>
<br>> ******************************************
<br>> keesh
<br>> Software Development Engineer
<br>> (Alchemist of the Millennium)
<br>>
<br>> Contact:
<br>> <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=50" target="_top" rel="nofollow">keesh@...</a>
<br>> ******************************************
<br>>
<br>> Work Life Plan:
<br>> To improve the quality of life for all mankind through better pattern
<br>> recognition techniques.
<br>>
<br>> Home Life Plan:
<br>> Married, but happy. Three bright beacons light my way.
<br>> -------------- next part --------------
<br>> An HTML attachment was scrubbed...
<br>> URL:
</div><a href="http://sourceforge.net/mailarchive/forum.php?forum=ij-plugins-users/attachme" target="_top" rel="nofollow">http://sourceforge.net/mailarchive/forum.php?forum=ij-plugins-users/attachme</a></div>nts/20061128/a903ce6f/attachment.html
<div class='shrinkable-quote'><div class='shrinkable-quote'><br>>
<br>> ------------------------------
<br>>
<br>> Message: 3
<br>> Date: Sun, 10 Dec 2006 17:20:11 -0600
<br>> From: "keesh" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=51" target="_top" rel="nofollow">keesh@...</a>>
<br>> Subject: [Ij-plugins-users] Fw: Full color volume rendering...
<br>> To: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=52" target="_top" rel="nofollow">ij-plugins-users@...</a>>
<br>> Message-ID: <018201c71cb1$bd918c10$6401a8c0@keeshhomedesk3>
<br>> Content-Type: text/plain; charset="iso-8859-1"
<br>>
<br>>
<br>> ----- Original Message -----
<br>> From: keesh
<br>> To: <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=53" target="_top" rel="nofollow">ij-plugins-users@...</a>
<br>> Sent: Tuesday, November 28, 2006 8:50 PM
<br>> Subject: Full color volume rendering...
<br>>
<br>>
<br>> ij-VTK Lurkers,
<br>>
<br>> Thanks to Jarek for finessing my "proof of concept" RGB
</div>VtkEncoder/VtkDecoder contribution
<br>> into a form more robust.
<br>>
<br>> I've been tryin' to get full color volume rendering working under ij-VTK.
<br>> I tried posting to the vtk users mailing list, but received no response.
<br>>
<br>> Although, full color volume rendering in VTK seems crude,
<br>> I was led to the "vtkFixedPointVolumeRayCastMapper" class by some older
</div>posts.
<br>> This class supposedly supports color volume rendering, but appears to
<br>cause JVM crashes.
<div class='shrinkable-quote'><div class='shrinkable-quote'><br>>
<br>> I will probably try VTK's test example next.
<br>>
<br>> ******************************************
<br>> keesh
<br>> Software Development Engineer
<br>> (Alchemist of the Millennium)
<br>>
<br>> Contact:
<br>> <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=54" target="_top" rel="nofollow">keesh@...</a>
<br>> ******************************************
<br>>
<br>> Work Life Plan:
<br>> To improve the quality of life for all mankind through better pattern
<br>> recognition techniques.
<br>>
<br>> Home Life Plan:
<br>> Married, but happy. Three bright beacons light my way.
<br>> -------------- next part --------------
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<br>> Message: 4
<br>> Date: Fri, 15 Dec 2006 21:20:51 -0600
<br>> From: "keesh" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=55" target="_top" rel="nofollow">keesh@...</a>>
<br>> Subject: [Ij-plugins-users] test
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<br>>
<br>> ******************************************
<br>> keesh
<br>> Software Development Engineer
<br>> (Alchemist of the Millennium)
<br>>
<br>> Contact:
<br>> <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=8209651&i=57" target="_top" rel="nofollow">keesh@...</a>
<br>> ******************************************
<br>>
<br>> Work Life Plan:
<br>> To improve the quality of life for all mankind through better pattern
<br>> recognition techniques.
<br>>
<br>> Home Life Plan:
<br>> Married, but happy. Three bright beacons light my way.
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<br>>
</div></div><br /> <div class="small"><br/><img src="http://old.nabble.com/images/icon_attachment.gif" > <strong>mri_color_vol_render1.jpg</strong> (38K) <a href="http://old.nabble.com/attachment/8209651/0/mri_color_vol_render1.jpg" target="_top">Download Attachment</a></div><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-7902993test2006-12-15T19:20:51Z2006-12-15T19:20:51Zkeesh<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
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<DIV> </DIV>
<DIV><FONT face=Arial size=2>******************************************<BR>keesh<BR>Software
Development Engineer<BR>(Alchemist of the Millennium)</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>Contact:<BR><a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7902993&i=0" target="_top" rel="nofollow">keesh@...</a><BR>******************************************</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>Work Life Plan:<BR>To improve the quality of life
for all mankind through better pattern<BR>recognition techniques.</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>Home Life Plan:<BR>Married, but happy. Three bright
beacons light my way.</FONT></DIV></BODY></HTML>
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<DIV style="FONT: 10pt arial">----- Original Message -----
<DIV style="BACKGROUND: #e4e4e4; font-color: black"><B>From:</B> <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7787451&i=0" target="_top" rel="nofollow">keesh@...</a> </DIV>
<DIV><B>To:</B> <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7787451&i=1" target="_top" rel="nofollow">ij-plugins-users@...</a>
</DIV>
<DIV><B>Sent:</B> Tuesday, November 28, 2006 8:50 PM</DIV>
<DIV><B>Subject:</B> Full color volume rendering...</DIV></DIV>
<DIV><BR></DIV>
<DIV><FONT face=Arial size=2>ij-VTK Lurkers,</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>Thanks to Jarek for finessing my "proof of concept"
RGB VtkEncoder/VtkDecoder contribution</FONT></DIV>
<DIV><FONT face=Arial size=2>into a form more robust.</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>I've been tryin' to get full color volume rendering
working under ij-VTK.</FONT></DIV>
<DIV><FONT face=Arial size=2>I tried posting to the vtk users mailing list, but
received no response.</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>Although, full color volume rendering in VTK seems
crude,</FONT></DIV>
<DIV><FONT face=Arial size=2>I was led to the "</FONT><FONT face=Arial size=2>vtkFixedPointVolumeRayCastMapper" class by some</FONT><FONT face=Arial size=2> older posts.</FONT></DIV>
<DIV><FONT face=Arial size=2>This class supposedly supports color volume
rendering, but appears to cause JVM crashes.</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>I will probably try VTK's test example
next.</FONT> </DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>******************************************<BR>keesh<BR>Software
Development Engineer<BR>(Alchemist of the Millennium)</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>Contact:<BR><a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7787451&i=2" target="_top" rel="nofollow">keesh@...</a><BR>******************************************</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>Work Life Plan:<BR>To improve the quality of life
for all mankind through better pattern<BR>recognition techniques.</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>Home Life Plan:<BR>Married, but happy. Three bright
beacons light my way.</FONT></DIV></BODY></HTML>
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<DIV><FONT face=Arial size=2>ij-VTK Lurkers,</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>Thanks to Jarek for finessing my "proof of concept"
RGB VtkEncoder/VtkDecoder contribution</FONT></DIV>
<DIV><FONT face=Arial size=2>into a form more robust.</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>I've been tryin' to get full color volume rendering
working under ij-VTK.</FONT></DIV>
<DIV><FONT face=Arial size=2>I tried posting to the vtk users mailing list, but
received no response.</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>Although, full color volume rendering in VTK seems
crude,</FONT></DIV>
<DIV><FONT face=Arial size=2>I was led to the "</FONT><FONT face=Arial size=2>vtkFixedPointVolumeRayCastMapper" class by some</FONT><FONT face=Arial size=2> older posts.</FONT></DIV>
<DIV><FONT face=Arial size=2>This class supposedly supports color volume
rendering, but appears to cause JVM crashes.</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>I will probably try VTK's test example
next.</FONT> </DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>******************************************<BR>keesh<BR>Software
Development Engineer<BR>(Alchemist of the Millennium)</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>Contact:<BR><a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7592404&i=0" target="_top" rel="nofollow">keesh@...</a><BR>******************************************</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>Work Life Plan:<BR>To improve the quality of life
for all mankind through better pattern<BR>recognition techniques.</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>Home Life Plan:<BR>Married, but happy. Three bright
beacons light my way.</FONT></DIV></BODY></HTML>
<br />-------------------------------------------------------------------------
<br>Take Surveys. Earn Cash. Influence the Future of IT
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<br><br>Thanks to Jarek for finessing my "proof of concept" RGB
<br>VtkEncoder/VtkDecoder contribution
<br>into a form more robust.
<br><br>I've been tryin' to get full color volume rendering working under ij-VTK.
<br>I tried posting to the VTK users mailing list, but received NO response.
<br><br>Although, full color volume rendering in VTK seems unintegrated,
<br>I was led to the "vtkFixedPointVolumeRayCastMapper" class by some older
<br>posts.
<br>This class supposedly supports color volume rendering, but appears to cause
<br>JVM crashes.
<br><br>I will probably try VTK's lone "vtkFixedPointVolumeRayCastMapper" test
<br>example next (maybe under TCL)
<br>e.-
<br>===
<br><br>----- Original Message -----
<br>From: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=0" target="_top" rel="nofollow">ij-plugins-users-request@...</a>>
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<br>Sent: Wednesday, September 27, 2006 5:41 PM
<br>Subject: Ij-plugins-users Digest, Vol 3, Issue 5
<br><br><div class='shrinkable-quote'><br>> Send Ij-plugins-users mailing list submissions to
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<br>> When replying, please edit your Subject line so it is more specific
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<br>>
<br>> Today's Topics:
<br>>
<br>> 1. Serializing/deserializing VTK classes (shu gao)
<br>> 2. Re: ij-VTK Server Timeout (keesh)
<br>>
<br>>
<br>> ----------------------------------------------------------------------
<br>>
<br>> Message: 1
<br>> Date: Wed, 27 Sep 2006 17:11:20 +0000
<br>> From: "shu gao" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=5" target="_top" rel="nofollow">gshu418@...</a>>
<br>> Subject: [Ij-plugins-users] Serializing/deserializing VTK classes
<br>> To: <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=6" target="_top" rel="nofollow">ij-plugins-users@...</a>
<br>> Message-ID: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=7" target="_top" rel="nofollow">BAY107-F212DA44C9EE1A838EEB9B3FB1A0@...</a>>
<br>> Content-Type: text/plain; format=flowed
<br>>
<br>> Dear all,
<br>> I am developing web service using VTK. I met some difficulties in
<br>> serializing /deserialing VTK objects. As an example,I modified
</div>Medical1.java
<br>> ,which is in the VTK-Examples,as a application in server side.So the
<br>return
<br>> of the web service is class Medical1.I got an
<br>> Exception--java.io.NotserializableException:vtk.vtkLight.And I also found
<br>> the other classes,such as vtkVolume16Reader,vtkContourFilter, and so on,
<br>all
<br>> seem not to be serialized.How do I
<br>> serialize /deserialze VTK objects? Any suggestion would be helpful and
<br>many
<div class='shrinkable-quote'><br>> thanks in advance.
<br>>
<br>> Kind regards,
<br>> Gao Shu
<br>>
<br>>
<br>>
<br>>
<br>> >From: "keesh" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=8" target="_top" rel="nofollow">keesh@...</a>>
<br>> >To: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=9" target="_top" rel="nofollow">ij-plugins-users@...</a>>
<br>> >Subject: [Ij-plugins-users] Full Color Volume Rendering?
<br>> >Date: Sun, 24 Sep 2006 17:17:17 -0500
<br>> >
<br>> >Jarek,
<br>> >
<br>> >I want to experiment with full color (RGB) volume rendering in ij-VTK.
<br>> >As I started to modify/test the source code, I ran into an exception in
<br>> >VtkEncoder
<br>> >(does not support RGB).
<br>> >I do not seem to have the source code for this "io" package?
<br>> >Would it be difficult to add support for RGB images into VtkEncoder?
<br>> >I already made up a simple RGB test stack in Image/J and I'm motivated
<br>> >to add RGB support into ij-VTK.
<br>> >
<br>> >note to self
<br>> >---
<br>> >Try a late-based vtkImageData::GetNumberofScalarComponents test.
<br>> >Try either applying no color transder function or a linear one on each
<br>> >channel.
<br>> >
<br>> >******************************************
<br>> >keesh
<br>> >Software Development Engineer
<br>> >(Alchemist of the Millennium)
<br>> >
<br>> >Contact:
<br>> ><a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=10" target="_top" rel="nofollow">keesh@...</a>
<br>> >******************************************
<br>> >
<br>> >Work Life Plan:
<br>> >To improve the quality of life for all mankind through better pattern
<br>> >recognition techniques.
<br>> >
<br>> >Home Life Plan:
<br>> >Married, but happy. Three bright beacons light my way.
<br>>
<br>>
<br>> >-------------------------------------------------------------------------
<br>> >Take Surveys. Earn Cash. Influence the Future of IT
<br>> >Join SourceForge.net's Techsay panel and you'll get the chance to share
<br>> >your
<br>> >opinions on IT & business topics through brief surveys -- and earn cash
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<br>>
<br>> ------------------------------
<br>>
<br>> Message: 2
<br>> Date: Wed, 27 Sep 2006 15:24:55 -0500
<br>> From: "keesh" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=12" target="_top" rel="nofollow">keesh@...</a>>
<br>> Subject: Re: [Ij-plugins-users] ij-VTK Server Timeout
<br>> To: "Jarek Sacha" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=13" target="_top" rel="nofollow">jsacha@...</a>>
<br>> Cc: <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=14" target="_top" rel="nofollow">Maximilian.Loy@...</a>, <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=15" target="_top" rel="nofollow">ij-plugins-users@...</a>,
<br>> <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=16" target="_top" rel="nofollow">heiko.gleitsmann@...</a>, <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=17" target="_top" rel="nofollow">farrokhi@...</a>
<br>> Message-ID: <003a01c6e272$ffd4c0c0$6401a8c0@keeshhomedesk3>
<br>> Content-Type: text/plain; charset="iso-8859-1"
<br>>
<br>> Jarek,
<br>>
<br>> Regarding CVS, nothing has changed on my end either.
<br>> Its been so long that I don't recall how I pulled down the initial ij-VTK
<br>> module?
<br>>
<br>> When did the CVS server change to ij-plugins.cvs.sourceforge.net from
<br>> cvs.sourceforge.net
<br>> (was there an e-mail sent out)?
<br>>
<br>> Do I have both update and checkin permissions on the main ij-plugins
<br>> (toolkit) module?
<br>> e.-
<br>> ===
<br>>
<br>>
<br>> ----- Original Message -----
<br>> From: "Jarek Sacha" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=18" target="_top" rel="nofollow">jsacha@...</a>>
<br>> To: "keesh" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=19" target="_top" rel="nofollow">keesh@...</a>>
<br>> Cc: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=20" target="_top" rel="nofollow">ij-plugins-users@...</a>>; <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=21" target="_top" rel="nofollow">Maximilian.Loy@...</a>>;
<br>> <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=22" target="_top" rel="nofollow">heiko.gleitsmann@...</a>>; <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=23" target="_top" rel="nofollow">farrokhi@...</a>>
<br>> Sent: Sunday, September 24, 2006 10:19 PM
<br>> Subject: Re: [Ij-plugins-users] ij-VTK Server Timeout
<br>>
<br>>
<br>> > I a bit confused as to you error message, not sure where it start and
<br>> > where ends.
<br>> >
<br>> > Part of it looks normal (lines c to m and very beginning of n - server
<br>> > ssh key is not in you cache).
<br>> >
<br>> > I am have no idea where the error from line a is coming from, as looks
<br>> > as if some security flags are not set right. I did not change anything
<br>> > for years.
<br>> >
<br>> > Line b may be the key, it looks as if you are trying to create a new
<br>> > 'ij-VTK' module in the repository. This is sure to fail as the module
<br>> > already exists. Other errors may be just a consequence of this one. You
<br>> > may be issuing a wrong CVS command.
<br>> >
<br>> > Jarek
<br>> >
<br>> > keesh wrote:
<br>> > > Jarek,
<br>> > >
<br>> > > I performed a basic test with RSA auth. via SSH which still appears to
<br>> work
<br>> > > fine.
<br>> > >
<br>> > > When I performed a simple text file checkin on a clean new project
</div>dir.
<div class='shrinkable-quote'><br>> I
<br>> > > got the following error.
<br>> > > What else has changed besides "ij-plugins.cvs.sourceforge.net"
<br>> > > as my previous CVS setup was working fine? Do I need new permissions
<br>> for
<br>> > > ij-VTK?
<br>> > > a.. Failed to checkout CVSROOT/cvswrappers. Permission to checkout
<br>> this
<br>> > > file is necessary to configure CVS to recognize certain binary file
<br>> types.
<br>> > > b.. Failed to create the module "ij-VTK" in the CVS repository. CVS
<br>> > > returned the following error:
<br>> > > c.. The servers host key is not cached in the registry. You
<br>> > > d.. have no guarantee that the server is the computer you
<br>> > > e.. think it is.
<br>> > > f.. The servers rsa2 key fingerprint is:
<br>> > > g.. ssh-rsa 1024 13:f1:65:c3:6c:b7:7e:a5:f0:f3:f5:19:f4:42:9c:4a
<br>> > > h.. If you trust this host, enter "y" to add the key to
<br>> > > i.. PuTTYs cache and carry on connecting.
<br>> > > j.. If you want to carry on connecting just once, without
<br>> > > k.. adding the key to the cache, enter "n".
<br>> > > l.. If you do not trust this host, press Return to abandon the
<br>> > > m.. connection.
<br>> > > n.. Store key in cache? (y/n) unrecognized request `responses ok
</div>error
<div class='shrinkable-quote'><br>> > > Valid-requests Checked-in New-entry Checksum Copy-file Updated Created
<br>> > > Update-existing Merged Patched Rcs-diff Mode Mod-time Removed
<br>> Remove-entry
<br>> > > Set-static-directory Clear-static-directory Set-sticky Clear-sticky
<br>> Template
<br>> > > Notified Module-expansion Wrapper-rcsOption M Mbinary E F MT
<br>> > > Do the following values look OK to you?
<br>> > >
<br>> > >>> team.ActiveVCS[0]=CVS
<br>> > >>> team.CvsAccessMethod[0]=ext
<br>> > >>> team.CvsBranch[0]=<main>
<br>> > >>> team.CvsModule[0]=ij-VTK
<br>> > >>>
<br>> > >>>
<br>> > >
<br>> team.CvsRemoteShell[0]=J:\Borland\JBuilder2005\thirdparty\putty\plink.exe
<br>> > >
<br>> > >>> team.CvsRepository[0]=/cvsroot/ij-plugins
<br>> > >>> team.CvsServer[0]=ij-plugins.cvs.sourceforge.net
<br>> > >>> team.CvsUsername[0]=keesh0
<br>> > >>>
<br>> > >
<br>> > > e.-
<br>> > > ===
<br>> > >
<br>> > > ----- Original Message -----
<br>> > > From: "Jarek Sacha" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=24" target="_top" rel="nofollow">jsacha@...</a>>
<br>> > > To: "keesh" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=25" target="_top" rel="nofollow">keesh@...</a>>
<br>> > > Cc: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=26" target="_top" rel="nofollow">ij-plugins-users@...</a>>;
<br>> <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=27" target="_top" rel="nofollow">Maximilian.Loy@...</a>>;
<br>> > > "Farrokhi, Shawn" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=28" target="_top" rel="nofollow">farrokhi@...</a>>;
</div><<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=29" target="_top" rel="nofollow">heiko.gleitsmann@...</a>>
<br>> > > Sent: Sunday, September 17, 2006 9:45 PM
<br>> > > Subject: Re: [Ij-plugins-users] ij-VTK Server Timeout
<br>> > >
<br>> > >
<br>> > >
<br>> > >> Keesh:
<br>> > >>
<br>> > >> I am not familiar it JBuilder setup. Did you try some other CVS
<br>client?
<br>> > >> Tested again to make sure with SmartCVS, IDEA, and NetBeans, I have
<br>no
<div class='shrinkable-quote'><br>> > >> problem accessing ij-plugins CVS.
<br>> > >> Did you try to check out the project in a new directory to make sure
<br>> > >> that you existing setup did not get corrupted? Can you access other
<br>> > >> projects' CVS on SourceForge?
<br>> > >>
<br>> > >> Jarek
<br>> > >>
<br>> > >> keesh wrote:
<br>> > >>
<br>> > >>> Jarek,
<br>> > >>>
<br>> > >>> Here are my updated Borland CVS settings...
<br>> > >>> team.ActiveVCS[0]=CVS
<br>> > >>>
<br>> > >>> team.CvsAccessMethod[0]=ext
<br>> > >>>
<br>> > >>> team.CvsAutosaveEnabled[0]=1
<br>> > >>>
<br>> > >>> team.CvsBranch[0]=<main>
<br>> > >>>
<br>> > >>> team.CvsModule[0]=ij-VTK
<br>> > >>>
<br>> > >>> team.CvsPruneEmptyDirs[0]=1
<br>> > >>>
<br>> > >>>
<br>> > >>>
<br>> > >
<br>> team.CvsRemoteShell[0]=J:\Borland\JBuilder2005\thirdparty\putty\plink.exe
<br>> > >
<br>> > >>> team.CvsRepository[0]=/cvsroot/ij-plugins
<br>> > >>>
<br>> > >>> team.CvsServer[0]=ij-plugins.cvs.sourceforge.net
<br>> > >>>
<br>> > >>> team.CvsShowConsole[0]=1
<br>> > >>>
<br>> > >>> team.CvsUsername[0]=keesh0
<br>> > >>>
<br>> > >>> team.lastScanned[0]=1158527699298
<br>> > >>>
<br>> > >>>
<br>> > >>>
<br>> > >
<br>>
</div>team.prunedDirectories[0]=src/cxx;src/java/net/sf/ij_plugins/utils;src/java/
<br>> > >
<br>> > >
<br>>
<br>net/sf/ij_plugins/vtk/prototype/surfacerender;src/java/net/sf/ij_plugins/vtk
<div class='shrinkable-quote'><br>> > >
<br>> > >>> /prototype/volumerender
<br>> > >>>
<br>> > >>> Any ideas why CVS still appears to be broken?
<br>> > >>> e.-
<br>> > >>> ===
<br>> > >>>
<br>> > >>> ----- Original Message -----
<br>> > >>> From: "keesh" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=30" target="_top" rel="nofollow">keesh@...</a>>
<br>> > >>> To: "keesh" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=31" target="_top" rel="nofollow">keesh@...</a>>
<br>> > >>> Sent: Monday, September 11, 2006 8:13 PM
<br>> > >>> Subject: Fw: [Ij-plugins-users] ij-VTK Server Timeout
<br>> > >>>
<br>> > >>>
<br>> > >>>
<br>> > >>>
<br>> > >>>> Developer CVS Access via SSH
<br>> > >>>>
<br>> > >>>> Only project developers can access the CVS tree via this method. A
<br>> SSH
<br>> > >>>> client must be installed on your client machine. Substitute
<br>> modulename
<br>> > >>>>
<br>> > > and
<br>> > >
<br>> > >>>> developername with the proper values. Enter your site password when
<br>> > >>>> prompted.
<br>> > >>>>
<br>> > >>>> Project administrators may limit CVS access to this repository
</div>using
<br>> > >>>> cvs_acls or the CVS access member permissions option. Developers
<br>may
<br>> > >>>>
<br>> > >>>>
<br>> > >>> verify
<br>> > >>>
<br>> > >>>
<br>> > >>>> their CVS access status on the admin page for this project.
<br>> > >>>>
<br>> > >>>> A significant amount of information about project CVS services may
<br>be
<div class='shrinkable-quote'><br>> > >>>>
<br>> > >>>>
<br>> > >>> found
<br>> > >>>
<br>> > >>>
<br>> > >>>> in our "CVS (Version Control for Source Code)".
<br>> > >>>>
<br>> > >>>> Developers may also make use of shared SSH keys for authentication.
<br>> > >>>>
<br>> > >>>> export CVS_RSH=ssh
<br>> > >>>>
<br>> > >>>>
<br>> > >>>>
<br>> > >>>>
<br>> > >
<br>>
</div>cvs -z3 -d:ext:<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=32" target="_top" rel="nofollow">developername@...</a>:/cvsroot/ij-plug
<div class='shrinkable-quote'><br>> > >
<br>> > >>>> ins co -P modulename
<br>> > >>>>
<br>> > >>>> NOTE: UNIX file and directory names are case sensitive. The path to
<br>> the
<br>> > >>>> project CVSROOT must be specified using lowercase characters (i.e.
<br>> > >>>> /cvsroot/ij-plugins)
<br>> > >>>>
<br>> > >>>> ----- Original Message -----
<br>> > >>>> From: "Jarek Sacha" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=33" target="_top" rel="nofollow">jarek@...</a>>
<br>> > >>>> To: "keesh" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=34" target="_top" rel="nofollow">keesh@...</a>>
<br>> > >>>> Cc: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=35" target="_top" rel="nofollow">ij-plugins-users@...</a>>;
<br>> > >>>>
<br>> > > <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=36" target="_top" rel="nofollow">Maximilian.Loy@...</a>>;
<br>> > >
<br>> > >>>> "Farrokhi, Shawn" <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=37" target="_top" rel="nofollow">farrokhi@...</a>>;
<br>> <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=38" target="_top" rel="nofollow">heiko.gleitsmann@...</a>>
<br>> > >>>> Sent: Sunday, September 10, 2006 9:38 PM
<br>> > >>>> Subject: Re: [Ij-plugins-users] ij-VTK Server Timeout
<br>> > >>>>
<br>> > >>>>
<br>> > >>>>
<br>> > >>>>
<br>> > >>>>> keesh wrote:
<br>> > >>>>>
<br>> > >>>>>
<br>> > >>>>>> But, I was unable to pull down the latest ij-VTK source code from
<br>> > >>>>>> Sourceforge
<br>> > >>>>>> using CVS (timeout errors).
<br>> > >>>>>> Have any repository paths changed?
<br>> > >>>>>>
<br>> > >>>>>>
<br>> > >>>>> SourceForge was doing some changes to CVS servers over past
</div>months.
<br>> I
<br>> > >>>>>
<br>> > > am
<br>> > >
<br>> > >>>>> not sure what and when changed, I updated my setup a while ago.
<br>CVS
<div class='shrinkable-quote'><br>> > >>>>>
<br>> > > info
<br>> > >
<br>> > >>>>> at project page:
<br>> > >>>>> <a href="http://sourceforge.net/cvs/?group_id=44711" target="_top" rel="nofollow">http://sourceforge.net/cvs/?group_id=44711</a><br>> > >>>>> has correct CVS configuration information (as far as I can tell).
<br>> > >>>>>
<br>> > >>>>> Jarek
<br>> > >>>>>
<br>> > >>>>>
<br>> > >>>>>
<br>> > >>>>>
<br>> > >>>>
<br>> > >>>
<br>> > >>>
<br>> > >>>
<br>> > >>>
<br>> > >>
<br>> > >>
<br>> > >
<br>> > >
<br>> > >
<br>> >
<br>>
<br>> -------------------------------------------------------------------------
<br>> > > Take Surveys. Earn Cash. Influence the Future of IT
<br>> > > Join SourceForge.net's Techsay panel and you'll get the chance to
</div>share
<br>> your
<br>> > > opinions on IT & business topics through brief surveys -- and earn
<br>cash
<div class='shrinkable-quote'><br>> > >
<br>> <a href="http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV" target="_top" rel="nofollow">http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV</a><br>> > > _______________________________________________
<br>> > > Ij-plugins-users mailing list
<br>> > > <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=39" target="_top" rel="nofollow">Ij-plugins-users@...</a>
<br>> > > <a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br>> > >
<br>> > >
<br>> > >
<br>> >
<br>> >
<br>> >
<br>>
<br>>
<br>>
<br>>
<br>>
<br>> ------------------------------
<br>>
<br>> -------------------------------------------------------------------------
<br>> Take Surveys. Earn Cash. Influence the Future of IT
<br>> Join SourceForge.net's Techsay panel and you'll get the chance to share
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<br>> ------------------------------
<br>>
<br>> _______________________________________________
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<br>> End of Ij-plugins-users Digest, Vol 3, Issue 5
<br>> **********************************************
<br>>
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<br>Ij-plugins-users mailing list
<br><a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7553585&i=41" target="_top" rel="nofollow">Ij-plugins-users@...</a>
<br><a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-7290167Re: build of ij-plugins Toolkit2006-11-10T23:02:27Z2006-11-10T23:02:27ZJarek SachaSorry, my bad. l2fprod library was removed from ij-plugins_toolkit. I
<br>added it back to ij-VTK. I posted release 0.6 of ij-VTK, though there
<br>are some issues. Filters: Continuous Dilate 3D, Continuous Erode 3D,
<br>Gaussian Smooth, and Median 3D should from 8-bit image input and produce
<br>8-bit image output, instead each is producing an RGB image that like
<br>tiles next of each other with 2/3 of the image black. To complicate the
<br>matter those filters seems to work fine when the input is an RGB image,
<br>though Anisotropic Diffusion and Laplacian fail on RGB images (work fine
<br>on 8-bit).
<br><br>Jarek
<br><br>keesh wrote:
<div class='shrinkable-quote'><br>> Jarek,
<br>>
<br>> ij-plugins_toolkit.jar did NOT seem to get updated in the ij-VTK \lib dir
<br>> under CVS.
<br>> Also, when I built the ij-plugins_toolkit.jar myself and then
<br>> tried to copy it to ij-VTK\lib, I got several JBuilder compiler errors?
<br>> Am I missing the l2fprod jar?
<br>>
<br>> "GenericBeanEditorPanel.java": package com.l2fprod.common.propertysheet does
<br>> not exist at line 23, column 41
<br>> "GenericBeanEditorPanel.java": package com.l2fprod.common.propertysheet does
<br>> not exist at line 24, column 41
<br>> "GenericBeanEditorPanel.java": cannot find symbol; symbol : class
<br>> PropertySheetPanel, location: class
<br>> net.sf.ij_plugins.vtk.prototype.GenericBeanEditorPanel at line 54, column 19
<br>> "GenericBeanEditorPanel.java": cannot find symbol; symbol : class
<br>> PropertySheetPanel, location: class
<br>> net.sf.ij_plugins.vtk.prototype.GenericBeanEditorPanel at line 54, column 58
<br>> "GenericBeanEditorPanel.java": cannot find symbol; symbol : variable
<br>> PropertySheet, location: class
<br>> net.sf.ij_plugins.vtk.prototype.GenericBeanEditorPanel at line 87, column 31
<br>>
<br>> e.-
<br>> ===
<br>>
<br>> ----- Original Message -----
<br>> From: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7290167&i=0" target="_top" rel="nofollow">ij-plugins-users-request@...</a>>
<br>> To: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7290167&i=1" target="_top" rel="nofollow">ij-plugins-users@...</a>>
<br>> Sent: Sunday, November 05, 2006 2:30 PM
<br>> Subject: Ij-plugins-users Digest, Vol 5, Issue 1
<br>>
<br>>
<br>>
<br>>> Send Ij-plugins-users mailing list submissions to
<br>>> <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7290167&i=2" target="_top" rel="nofollow">ij-plugins-users@...</a>
<br>>>
<br>>> To subscribe or unsubscribe via the World Wide Web, visit
<br>>> <a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br>>> or, via email, send a message with subject or body 'help' to
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<br>>>
<br>>> You can reach the person managing the list at
<br>>> <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7290167&i=4" target="_top" rel="nofollow">ij-plugins-users-owner@...</a>
<br>>>
<br>>> When replying, please edit your Subject line so it is more specific
<br>>> than "Re: Contents of Ij-plugins-users digest..."
<br>>>
<br>>>
<br>>> Today's Topics:
<br>>>
<br>>> 1. ij-plugins Toolkit v.1.1 (Jarek Sacha)
<br>>>
<br>>>
<br>>> ----------------------------------------------------------------------
<br>>>
<br>>> Message: 1
<br>>> Date: Sun, 05 Nov 2006 00:43:16 -0500
<br>>> From: Jarek Sacha <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7290167&i=5" target="_top" rel="nofollow">jsacha@...</a>>
<br>>> Subject: [Ij-plugins-users] ij-plugins Toolkit v.1.1
<br>>> To: <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7290167&i=6" target="_top" rel="nofollow">ij-plugins-users@...</a>
<br>>> Message-ID: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7290167&i=7" target="_top" rel="nofollow">454D79F4.4030400@...</a>>
<br>>> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
<br>>>
<br>>> I uploaded build of ij-plugins Toolkit v.1.1. It includes changes that
<br>>> accumulated over the past year. Details are at the end.
<br>>> Please let me know if everything works fine.
<br>>>
<br>>> Jarek
<br>>>
<br>>> ------------------------------------
<br>>>
<br>>> Bug fixes:
<br>>> * Correct spelling of PeronaMalikAnisotropicDiffusion* classes.
<br>>>
<br>>> Improvements:
<br>>> * VectorProcessor improvements.
<br>>>
<br>>> * ProgressReporter - Change method names for access and update of
<br>>> current progress.
<br>>>
<br>>> * Remove dependency on L2FProf library, use DialogUtils instead.
<br>>>
<br>>> * Speedup computation of maximum entropy multi threshold by caching
<br>>> interval entropy computation (about 30x speedup for 3-threshold).
<br>>>
<br>>> * VTKEncoder/Decoder - Add support for reading/writing RGB images in VTK
<br>>> format. Contributed by keesh on 2006-10-22.
<br>>>
<br>>>
<br>>> New:
<br>>> * DialogUtil: utilities for simplifying creation of property editor
<br>>>
<br>> dialogs.
<br>>
<br>>> * AbstractAnisotropicDiffusion*: Abstract base classes to simplify
<br>>> creation of anisotropic diffusion filters and plugins.
<br>>>
<br>>> * SRAD - Spackle Reducing Anisotropic Diffusion
<br>>>
<br>>> * RGB to YCbCr color space conversion.
<br>>>
<br>>> * IJDebug utility for logging only when IJ.debugMode is on.
<br>>>
<br>>>
<br>>>
<br>>>
<br>>>
<br>>>
<br>>> ------------------------------
<br>>>
<br>>> -------------------------------------------------------------------------
<br>>> Using Tomcat but need to do more? Need to support web services, security?
<br>>> Get stuff done quickly with pre-integrated technology to make your job
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<br>>>
<br>>> End of Ij-plugins-users Digest, Vol 5, Issue 1
<br>>> **********************************************
<br>>>
<br>>>
<br>>>
<br>>
<br>>
<br>>
<br>> -------------------------------------------------------------------------
<br>> Using Tomcat but need to do more? Need to support web services, security?
<br>> Get stuff done quickly with pre-integrated technology to make your job easier
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<br>>
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<br>Ij-plugins-users mailing list
<br><a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7290167&i=10" target="_top" rel="nofollow">Ij-plugins-users@...</a>
<br><a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-7285630build of ij-plugins Toolkit2006-11-10T13:33:54Z2006-11-10T13:33:54ZkeeshJarek,
<br><br>ij-plugins_toolkit.jar did NOT seem to get updated in the ij-VTK \lib dir
<br>under CVS.
<br>Also, when I built the ij-plugins_toolkit.jar myself and then
<br>tried to copy it to ij-VTK\lib, I got several JBuilder compiler errors?
<br>Am I missing the l2fprod jar?
<br><br>"GenericBeanEditorPanel.java": package com.l2fprod.common.propertysheet does
<br>not exist at line 23, column 41
<br>"GenericBeanEditorPanel.java": package com.l2fprod.common.propertysheet does
<br>not exist at line 24, column 41
<br>"GenericBeanEditorPanel.java": cannot find symbol; symbol : class
<br>PropertySheetPanel, location: class
<br>net.sf.ij_plugins.vtk.prototype.GenericBeanEditorPanel at line 54, column 19
<br>"GenericBeanEditorPanel.java": cannot find symbol; symbol : class
<br>PropertySheetPanel, location: class
<br>net.sf.ij_plugins.vtk.prototype.GenericBeanEditorPanel at line 54, column 58
<br>"GenericBeanEditorPanel.java": cannot find symbol; symbol : variable
<br>PropertySheet, location: class
<br>net.sf.ij_plugins.vtk.prototype.GenericBeanEditorPanel at line 87, column 31
<br><br>e.-
<br>===
<br><br>----- Original Message -----
<br>From: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7285630&i=0" target="_top" rel="nofollow">ij-plugins-users-request@...</a>>
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<br>Sent: Sunday, November 05, 2006 2:30 PM
<br>Subject: Ij-plugins-users Digest, Vol 5, Issue 1
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<br>> Today's Topics:
<br>>
<br>> 1. ij-plugins Toolkit v.1.1 (Jarek Sacha)
<br>>
<br>>
<br>> ----------------------------------------------------------------------
<br>>
<br>> Message: 1
<br>> Date: Sun, 05 Nov 2006 00:43:16 -0500
<br>> From: Jarek Sacha <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7285630&i=5" target="_top" rel="nofollow">jsacha@...</a>>
<br>> Subject: [Ij-plugins-users] ij-plugins Toolkit v.1.1
<br>> To: <a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7285630&i=6" target="_top" rel="nofollow">ij-plugins-users@...</a>
<br>> Message-ID: <<a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7285630&i=7" target="_top" rel="nofollow">454D79F4.4030400@...</a>>
<br>> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
<br>>
<br>> I uploaded build of ij-plugins Toolkit v.1.1. It includes changes that
<br>> accumulated over the past year. Details are at the end.
<br>> Please let me know if everything works fine.
<br>>
<br>> Jarek
<br>>
<br>> ------------------------------------
<br>>
<br>> Bug fixes:
<br>> * Correct spelling of PeronaMalikAnisotropicDiffusion* classes.
<br>>
<br>> Improvements:
<br>> * VectorProcessor improvements.
<br>>
<br>> * ProgressReporter - Change method names for access and update of
<br>> current progress.
<br>>
<br>> * Remove dependency on L2FProf library, use DialogUtils instead.
<br>>
<br>> * Speedup computation of maximum entropy multi threshold by caching
<br>> interval entropy computation (about 30x speedup for 3-threshold).
<br>>
<br>> * VTKEncoder/Decoder - Add support for reading/writing RGB images in VTK
<br>> format. Contributed by keesh on 2006-10-22.
<br>>
<br>>
<br>> New:
<br>> * DialogUtil: utilities for simplifying creation of property editor
</div>dialogs.
<div class='shrinkable-quote'><br>>
<br>> * AbstractAnisotropicDiffusion*: Abstract base classes to simplify
<br>> creation of anisotropic diffusion filters and plugins.
<br>>
<br>> * SRAD - Spackle Reducing Anisotropic Diffusion
<br>>
<br>> * RGB to YCbCr color space conversion.
<br>>
<br>> * IJDebug utility for logging only when IJ.debugMode is on.
<br>>
<br>>
<br>>
<br>>
<br>>
<br>>
<br>> ------------------------------
<br>>
<br>> -------------------------------------------------------------------------
<br>> Using Tomcat but need to do more? Need to support web services, security?
<br>> Get stuff done quickly with pre-integrated technology to make your job
</div>easier
<div class='shrinkable-quote'><br>> Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
<br>> <a href="http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642" target="_top" rel="nofollow">http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642</a><br>>
<br>> ------------------------------
<br>>
<br>> _______________________________________________
<br>> Ij-plugins-users mailing list
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<br>>
<br>> End of Ij-plugins-users Digest, Vol 5, Issue 1
<br>> **********************************************
<br>>
<br>>
</div><br><br><br>-------------------------------------------------------------------------
<br>Using Tomcat but need to do more? Need to support web services, security?
<br>Get stuff done quickly with pre-integrated technology to make your job easier
<br>Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
<br><a href="http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642" target="_top" rel="nofollow">http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642</a><br>_______________________________________________
<br>Ij-plugins-users mailing list
<br><a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7285630&i=9" target="_top" rel="nofollow">Ij-plugins-users@...</a>
<br><a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-7182228ij-plugins Toolkit v.1.12006-11-04T21:43:16Z2006-11-04T21:43:16ZJarek Sacha-2I uploaded build of ij-plugins Toolkit v.1.1. It includes changes that
<br>accumulated over the past year. Details are at the end.
<br>Please let me know if everything works fine.
<br><br>Jarek
<br><br>------------------------------------
<br><br>Bug fixes:
<br>* Correct spelling of PeronaMalikAnisotropicDiffusion* classes.
<br><br>Improvements:
<br>* VectorProcessor improvements.
<br><br>* ProgressReporter - Change method names for access and update of
<br>current progress.
<br><br>* Remove dependency on L2FProf library, use DialogUtils instead.
<br><br>* Speedup computation of maximum entropy multi threshold by caching
<br>interval entropy computation (about 30x speedup for 3-threshold).
<br><br>* VTKEncoder/Decoder - Add support for reading/writing RGB images in VTK
<br>format. Contributed by keesh on 2006-10-22.
<br><br><br>New:
<br>* DialogUtil: utilities for simplifying creation of property editor dialogs.
<br><br>* AbstractAnisotropicDiffusion*: Abstract base classes to simplify
<br>creation of anisotropic diffusion filters and plugins.
<br><br>* SRAD - Spackle Reducing Anisotropic Diffusion
<br><br>* RGB to YCbCr color space conversion.
<br><br>* IJDebug utility for logging only when IJ.debugMode is on.
<br><br><br><br><br>-------------------------------------------------------------------------
<br>Using Tomcat but need to do more? Need to support web services, security?
<br>Get stuff done quickly with pre-integrated technology to make your job easier
<br>Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
<br><a href="http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642" target="_top" rel="nofollow">http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642</a><br>_______________________________________________
<br>Ij-plugins-users mailing list
<br><a href="http://old.nabble.com/user/SendEmail.jtp?type=post&post=7182228&i=0" target="_top" rel="nofollow">Ij-plugins-users@...</a>
<br><a href="https://lists.sourceforge.net/lists/listinfo/ij-plugins-users" target="_top" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/ij-plugins-users</a><br><p>From forum: <a href="http://old.nabble.com/ij-plugins-users-f3839.html" embed="fixTarget[3839]" target="_top" >ij-plugins-users</a></p>tag:old.nabble.com,2006:post-7095223Urgent!Serializing /deserializing VTK classes2006-10-31T06:38:03Z2006-10-31T06:38:03Zshu gaoHi all,
<br>I am using XStream (<a href="http://xstream.codehaus.org/" target="_top" rel="nofollow">http://xstream.codehaus.org/</a>) to serialize/deserilize
<br>some classes.But I always met an error as follows if serializating an object
<br>in one class and deserializing it in another class:
<br>#
<br># An unexpected error has been detected by HotSpot Virtual Machine:
<br>#
<br># EXCEPTION_ACCESS_VIOLATION (0xc0000005) at pc=0x10046fd7, pid=3548,
<br>tid=1456
<br>#
<br># Java VM: Java HotSpot(TM) Client VM (1.5.0_06-b05 mixed mode, sharing)
<br># Problematic frame:
<br># C [vtkCommonJava.dll+0x46fd7]
<br>#
<br>#An error report file with more information is saved as hs_err_pid1132.log
<br>#
<br>#If you would like to submit a bug report,please visit:
<br>#<a href="http://java.sun.com/webapps/bugreport/crash.jsp" target="_top" rel="nofollow">http://java.sun.com/webapps/bugreport/crash.jsp</a><br><br>The sample is in the attachment,which is slightly modified from
<br>Medical1.java in VTK Examples
<br>(<a href="http://ij-plugins.sourceforge.net/vtk-examples/index.html" target="_top" rel="nofollow">http://ij-plugins.sourceforge.net/vtk-examples/index.html</a> ).And I found if
<br>I defined an object like this:
<br><br>vtkVolume16Reader vv16 = new vtkVolume16Reader();
<br> vv16.SetDataDimensions(64, 64);
<br> vv16.SetDataByteOrderToLittleEndian();
<br> v16.SetFilePrefix(VtkUtil.getVtkDataRoot() + "/Data/headsq/quarter");
<br> vv16.SetImageRange(1, 93);
<br> vv16.SetDataSpacing(3.2, 3.2, 1.5);
<br><br>The result of serializing it is like this:
<br><br><vtk.vtkVolume16Reader>
<br><br><vtkId>4</vtkId>
<br><br></vtk.vtkVolume16Reader>
<br><br>It is so simple.What does <vtkId> mean?Where is the data in the object ,such
<br>as Dimension,ImageRange and so on.And I guess some "context" is hiden in
<br>some
<br><br>other place.And the error above will be made if serializating the object in
<br>one class and deserializing it in another class. How to solve it? Any
<br>suggestion will be helpful.Many thanks in advance.
<br><br>Kind regards,
<br>Gao S.
<br><br>_________________________________________________________________
<br>Windows Live Messenger has arrived. Click here to download it for free!
<br><a href="http://imagine-msn.com/messenger/launch80/?locale=en-gb" target="_top" rel="nofollow">http://imagine-msn.com/messenger/launch80/?locale=en-gb</a><br><br /><tt>[Medical1.java]</tt><br /><hr align="left" width="300" /><tt><br>import vtk.util.VtkPanelContainer;
<br>import vtk.util.VtkPanelUtil;
<br>import vtk.util.VtkUtil;
<br>import vtk.*;
<br><br>import javax.swing.*;
<br>import java.awt.*;
<br>import com.thoughtworks.xstream.*;
<br><br><br>public class Medical1 extends JComponent
<br> {
<br><br> public Medical1(vtkPanel renWin,vtkActor sskin,vtkActor ooutline) {
<br><br> vtkCamera aCamera = new vtkCamera();
<br> aCamera.SetViewUp(0, 0, -1);
<br> aCamera.SetPosition(0, 1, 0);
<br> aCamera.SetFocalPoint(0, 0, 0);
<br> aCamera.ComputeViewPlaneNormal();
<br> // Actors are added to the renderer. An initial camera view is created.
<br> // The Dolly() method moves the camera towards the FocalPoint,
<br> // thereby enlarging the image.
<br><br> System.out.println("Dispimage after camera ");
<br><br> renWin.GetRenderer().AddActor(ooutline);
<br> renWin.GetRenderer().AddActor(sskin);
<br><br><br> renWin.GetRenderer().SetActiveCamera(aCamera);
<br> renWin.GetRenderer().ResetCamera();
<br> aCamera.Dolly(1.5);
<br><br> // Set a background color for the renderer and set the size of the
<br> // render window (expressed in pixels).
<br> renWin.GetRenderer().SetBackground(1, 1, 1);
<br> VtkPanelUtil.setSize(renWin, 640, 480);
<br><br><br> renWin.GetRenderer().ResetCameraClippingRange();
<br><br> // Setup panel
<br> setLayout(new BorderLayout());
<br><br> add(renWin, BorderLayout.CENTER);
<br><br> }
<br><br> public static void main(String s[]) {
<br><br> XStream xstream=new XStream();
<br><br> vtkPanel renWin = new vtkPanel();
<br><br>readfile rf;
<br>String rfret;
<br><br> rf=new readfile();
<br> rfret=rf.p1();
<br><br> filter ft=new filter();
<br> String ftret=ft.p2(rfret);
<br> vtkActor sskin=(vtkActor)xstream.fromXML(ftret);
<br><br> filtercontext fc=new filtercontext();
<br> String fcret=fc.p3(rfret);
<br> vtkActor ooutline=(vtkActor)xstream.fromXML(fcret);
<br><br> Medical1 panel = new Medical1(renWin,sskin,ooutline);
<br><br> JFrame frame = new JFrame("Medical1");
<br><br> frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
<br> frame.getContentPane().add("Center", panel);
<br><br> frame.pack();
<br> frame.setVisible(true);
<br> }
<br><br>}
<br><br><br>class readfile
<br>{
<br> String p1(){
<br>//vtkPanel renWin=new vtkPanel();
<br> String xml;
<br> XStream xstream=new XStream();
<br><br> vtkVolume16Reader vv16 = new vtkVolume16Reader();
<br> vv16.SetDataDimensions(64, 64);
<br> vv16.SetDataByteOrderToLittleEndian();
<br> vv16.SetFilePrefix(VtkUtil.getVtkDataRoot() + "/Data/headsq/quarter");
<br><br> vv16.SetImageRange(1, 93);
<br> vv16.SetDataSpacing(3.2, 3.2, 1.5);
<br>////////////////////////////////
<br><br> xml =xstream.toXML(vv16);
<br> // vtkVolume16Reader vv16=(vtkVolume16Reader)xstream.fromXML(xml);
<br><br> System.out.println("\n in p1 v16 "+xml);
<br><br> return (xml);
<br><br> }
<br>}
<br>class filter{
<br><br> String p2(String xml)
<br> {
<br><br> XStream xstream=new XStream();
<br><br> vtkVolume16Reader vv16=(vtkVolume16Reader)xstream.fromXML(xml);
<br> vtkContourFilter skinExtractor = new vtkContourFilter();
<br> skinExtractor.SetInput(vv16.GetOutput());
<br> skinExtractor.SetValue(0, 500);
<br><br> vtkPolyDataNormals skinNormals = new vtkPolyDataNormals();
<br> skinNormals.SetInput(skinExtractor.GetOutput());
<br> skinNormals.SetFeatureAngle(60.0);
<br><br> vtkPolyDataMapper skinMapper = new vtkPolyDataMapper();
<br> skinMapper.SetInput(skinNormals.GetOutput());
<br> skinMapper.ScalarVisibilityOff();
<br><br> vtkActor skin = new vtkActor();
<br> skin.SetMapper(skinMapper);
<br><br> xml =xstream.toXML(skin);
<br> return(xml);
<br> }
<br><br> }
<br><br>class filtercontext{
<br> String p3(String xml){
<br> XStream xstream=new XStream();
<br><br> System.out.println("begin of p3");
<br> vtkVolume16Reader vv16=(vtkVolume16Reader)xstream.fromXML(xml);
<br><br> vtkOutlineFilter outlineData = new vtkOutlineFilter();
<br> outlineData.SetInput(vv16.GetOutput());
<br><br><br> vtkPolyDataMapper mapOutline = new vtkPolyDataMapper();
<br> mapOutline.SetInput(outlineData.GetOutput());
<br><br> vtkActor outline = new vtkActor();
<br> outline.SetMapper(mapOutline);
<br> outline.GetProperty().SetColor(0, 0, 0);
<br><br> String pxml =xstream.toXML(outline);
<br><br> return(pxml);
<br> }
<br><br><br> }
<br><br><br><br></tt><hr align="left" width="300" /><br />-------------------------------------------------------------------------
<br>Using Tomcat but need to do more? Need to support web services, security?
<br>Get stuff done quickly with pre-integrated technology to make your job easier
<br>Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
<br><a href="http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642" target="_top" rel="nofollow">http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642</a><br />_______________________________________________
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