I'm posting this message out of pure desperation, because I really don't
know what else to try. I'm a beginner in bioperl and I'm working on a
script to parse out some results I got from MolQuest fgenesh. Results
are out in .txt format and I want to parse them to GFF and fasta file
for mRNA and protein sequences to facilitate comparison with other
results we have. I would like to use BioPerl for other purposes in the
future so I'm very interested in getting it ready on my pc
I followed the instructions
herehttp://www.bioperl.org/wiki/Installing_Bioperl_for_Unix. I managed
to install CPAN in root mode (otherwise it wouldn't work) and BioPerl
via CPAN. All tests were ok, but when I ran this script to test the
installation
| use strict;
use warnings;
use Getopt::Long;
use Bio::EnsEMBL::Registry;
my $reg = "Bio::EnsEMBL::Registry";
$reg->load_registry_from_db(
-host => "ensembldb.ensembl.org",
-user => "anonymous"
);
my $db_list=$reg->get_all_adaptors();
my @line;
foreach my $db (@$db_list){
@line = split ('=',$db);
print $line[0]."\n";
}
|
I got the error:*"Can't locate Bio/EnsEMBL/Registry.pm in @INC"*
I tried to install BioPerl again via Build.PL, running as root, but
still came to the same outcome.
Thanks for your help Merche
--
************************************;)
Mercedes Castillo
INRES, Dept. Molecular Phytomedicine
University of Bonn
Karlrobert-Kreiten-str 13
53115 Bonn
+49(0)22873-60143
merche@...
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