Query regarding gbrowse configuration

[Praveen Raj-2]

Dear GBrowse Dev Team,

I found GBrowse2.0 really interesting and awesome when I started working on it. But I faced issues to customize the sections in the page as I don't require any sections other than "Overview" and "Details"

Please suggest how can I disable or hide sections "Instructions", "Search", "Tracks","Add Custom Track" and "Display Settings". I want only two - "Overview" and "Details" - in my page. I google it and searched in GMOD forums, but I didn't get any solutions.

Please provide me the way I can resolve this

Thanks in advance

Praveen Raj
Bioinformatics Developer

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[Dave Clements, GMOD Help Desk]

Hi Praveen,

>From http://gmod.org/wiki/GBrowse_Configuration_HOWTO#Appearance_Options:

    *  instructions section, search section, overview section, region
section, details section, tracks section, display_settings section,
upload_tracks section

These options control which sections are displayed and whether they
are initially open or collapsed. Their values are one of:
open Show the section initially open
closed Show the section initially collapsed
off Do not show the section at all

Dave C.



On Tue, May 26, 2009 at 4:18 AM, Praveen Raj <pravee1216@...> wrote:

>
> Dear GBrowse Dev Team,
>
> I found GBrowse2.0 really interesting and awesome when I started working on
> it. But I faced issues to customize the sections in the page as I don't
> require any sections other than "Overview" and "Details"
>
> Please suggest how can I disable or hide sections "Instructions", "Search",
> "Tracks","Add Custom Track" and "Display Settings". I want only two -
> "Overview" and "Details" - in my page. I google it and searched in GMOD
> forums, but I didn't get any solutions.
>
> Please provide me the way I can resolve this
>
> Thanks in advance
>
> Praveen Raj
> Bioinformatics Developer
>
> ------------------------------------------------------------------------------
> Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT
> is a gathering of tech-side developers & brand creativity professionals.
> Meet
> the minds behind Google Creative Lab, Visual Complexity, Processing, &
> iPhoneDevCamp asthey present alongside digital heavyweights like Barbarian
> Group, R/GA, & Big Spaceship. http://www.creativitycat.com
> _______________________________________________
> Gmod-gbrowse mailing list
> Gmod-gbrowse@...
> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>
>

Was this helpful?  Let us know at http://gmod.org/wiki/Help_Desk_Feedback

Learn more about GMOD at:
  SMBE: http://ccg.biology.uiowa.edu/smbe/symposia.php?action=view&sym_ID=27
  Arthropod Genomics: http://www.k-state.edu/agc/symp2009/seminar.html
  AGA Next Gen Seq in Non-Models: http://www.regonline.com/Nextgeneration

------------------------------------------------------------------------------
Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT
is a gathering of tech-side developers & brand creativity professionals. Meet
the minds behind Google Creative Lab, Visual Complexity, Processing, &
iPhoneDevCamp as they present alongside digital heavyweights like Barbarian
Group, R/GA, & Big Spaceship. http://p.sf.net/sfu/creativitycat-com 
_______________________________________________
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[Praveen Raj-2]

Dear GMOD Team,

Thanks a lot for you support in time.

I have one more query which is related to the links in the navigation table - both SVG_LINK and PDF_LINK, which are not coming.
I have GD::SVG and Inkscape installed in my linux box, but still I would be able to see those links. Can you please help me out as this would be great requirement for research people.

Looking for your valuable response.

Regards
Praveen Raj
--

On Fri, May 29, 2009 at 3:28 AM, Dave Clements, GMOD Help Desk <gmodhelp@...> wrote:

Hi Praveen,

>From http://gmod.org/wiki/GBrowse_Configuration_HOWTO#Appearance_Options:

   *  instructions section, search section, overview section, region
section, details section, tracks section, display_settings section,
upload_tracks section

These options control which sections are displayed and whether they
are initially open or collapsed. Their values are one of:
open    Show the section initially open
closed  Show the section initially collapsed
off     Do not show the section at all

Dave C.

On Tue, May 26, 2009 at 4:18 AM, Praveen Raj <pravee1216@...> wrote:
>
> Dear GBrowse Dev Team,
>
> I found GBrowse2.0 really interesting and awesome when I started working on
> it. But I faced issues to customize the sections in the page as I don't
> require any sections other than "Overview" and "Details"
>
> Please suggest how can I disable or hide sections "Instructions", "Search",
> "Tracks","Add Custom Track" and "Display Settings". I want only two -
> "Overview" and "Details" - in my page. I google it and searched in GMOD
> forums, but I didn't get any solutions.
>
> Please provide me the way I can resolve this
>
> Thanks in advance
>
> Praveen Raj
> Bioinformatics Developer
>

> ------------------------------------------------------------------------------
> Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT
> is a gathering of tech-side developers & brand creativity professionals.
> Meet
> the minds behind Google Creative Lab, Visual Complexity, Processing, &
> iPhoneDevCamp asthey present alongside digital heavyweights like Barbarian
> Group, R/GA, & Big Spaceship. http://www.creativitycat.com
> _______________________________________________
> Gmod-gbrowse mailing list
> Gmod-gbrowse@...
> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>
>

Was this helpful?  Let us know at http://gmod.org/wiki/Help_Desk_Feedback

Learn more about GMOD at:
 SMBE: http://ccg.biology.uiowa.edu/smbe/symposia.php?action=view&sym_ID=27
 Arthropod Genomics: http://www.k-state.edu/agc/symp2009/seminar.html
 AGA Next Gen Seq in Non-Models: http://www.regonline.com/Nextgeneration

--
Praveen Raj S.
Associate - Life Sciences,
Mascon Global Limited,
758, Sector V, Udyog Vihar,
Gurgaon, Haryana State.
Pin:- 122 016
Moblie: 09911773253

------------------------------------------------------------------------------
OpenSolaris 2009.06 is a cutting edge operating system for enterprises
looking to deploy the next generation of Solaris that includes the latest
innovations from Sun and the OpenSource community. Download a copy and
enjoy capabilities such as Networking, Storage and Virtualization.
Go to: http://p.sf.net/sfu/opensolaris-get
_______________________________________________
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[Scott Cain-4]

hi Praveen,

What do you see?  Are the links present at all?  When you click on the
links, what happens?  Are the any messages in the error log?  Do you
know if your browser is capable of displaying SVGs?

Scott

On Thursday, May 28, 2009, Dave Clements, GMOD Help Desk
<gmodhelp@...> wrote:

> Hi Praveen,
>
> >From http://gmod.org/wiki/GBrowse_Configuration_HOWTO#Appearance_Options:
>
>     *  instructions section, search section, overview section, region
> section, details section, tracks section, display_settings section,
> upload_tracks section
>
> These options control which sections are displayed and whether they
> are initially open or collapsed. Their values are one of:
> open    Show the section initially open
> closed  Show the section initially collapsed
> off     Do not show the section at all
>
> Dave C.
>
>
>
> On Tue, May 26, 2009 at 4:18 AM, Praveen Raj <pravee1216@...> wrote:
>>
>> Dear GBrowse Dev Team,
>>
>> I found GBrowse2.0 really interesting and awesome when I started working on
>> it. But I faced issues to customize the sections in the page as I don't
>> require any sections other than "Overview" and "Details"
>>
>> Please suggest how can I disable or hide sections "Instructions", "Search",
>> "Tracks","Add Custom Track" and "Display Settings". I want only two -
>> "Overview" and "Details" - in my page. I google it and searched in GMOD
>> forums, but I didn't get any solutions.
>>
>> Please provide me the way I can resolve this
>>
>> Thanks in advance
>>
>> Praveen Raj
>> Bioinformatics Developer
>>
>> ------------------------------------------------------------------------------
>> Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT
>> is a gathering of tech-side developers & brand creativity professionals.
>> Meet
>> the minds behind Google Creative Lab, Visual Complexity, Processing, &
>> iPhoneDevCamp asthey present alongside digital heavyweights like Barbarian
>> Group, R/GA, & Big Spaceship. http://www.creativitycat.com
>> _______________________________________________
>> Gmod-gbrowse mailing list
>> Gmod-gbrowse@...
>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>>
>>
>
> Was this helpful?  Let us know at http://gmod.org/wiki/Help_Desk_Feedback
>
> Learn more about GMOD at:
>   SMBE: http://ccg.biology.uiowa.edu/smbe/symposia.php?action=view&sym_ID=27
>   Arthropod Genomics: http://www.k-state.edu/agc/symp2009/seminar.html
>   AGA Next Gen Seq in Non-Models: http://www.regonline.com/Nextgeneration
>
> ------------------------------------------------------------------------------
> Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT
> is a gathering of tech-side developers & brand creativity professionals. Meet
> the minds behind Google Creative Lab, Visual Complexity, Processing, &
> iPhoneDevCamp as they present alongside digital heavyweights like Barbarian
> Group, R/GA, & Big Spaceship. http://p.sf.net/sfu/creativitycat-com
> _______________________________________________
> Gmod-gbrowse mailing list
> Gmod-gbrowse@...
> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>

--
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

------------------------------------------------------------------------------
OpenSolaris 2009.06 is a cutting edge operating system for enterprises
looking to deploy the next generation of Solaris that includes the latest
innovations from Sun and the OpenSource community. Download a copy and
enjoy capabilities such as Networking, Storage and Virtualization.
Go to: http://p.sf.net/sfu/opensolaris-get
_______________________________________________
Gmod-gbrowse mailing list
Gmod-gbrowse@...
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse

[Praveen Raj-2]

Some parts of this message have been removed. Learn more about Nabble's security policy.

 

Hi Scott,

 

Even I can't see the links !!! Both GD::SVG and Inskscape are installed and verified, still links are not coming.No error messages in the log file. Both $HAVE_SVG and $HAVE_PDF variables are still null even if GD::SVG and Inskscape are present. I am using both FireFox 3 and Netscape 9 for browsing. I want both SVG and "Download PDF" as it is big requirement for us. Is there any other pre-requisites for these links??

 

Please suggest a way to resolve this.

 

Regards

Praveen
 

On 6/5/09, Scott Cain <scott@...> wrote:

hi Praveen,

What do you see?  Are the links present at all?  When you click on the
links, what happens?  Are the any messages in the error log?  Do you
know if your browser is capable of displaying SVGs?

Scott

On Thursday, May 28, 2009, Dave Clements, GMOD Help Desk
<gmodhelp@...> wrote:
> Hi Praveen,
>
> >From http://gmod.org/wiki/GBrowse_Configuration_HOWTO#Appearance_Options:
>
>     *  instructions section, search section, overview section, region
> section, details section, tracks section, display_settings section,
> upload_tracks section
>
> These options control which sections are displayed and whether they
> are initially open or collapsed. Their values are one of:
> open    Show the section initially open
> closed  Show the section initially collapsed
> off     Do not show the section at all
>
> Dave C.
>
>
>
> On Tue, May 26, 2009 at 4:18 AM, Praveen Raj <pravee1216@...> wrote:
>>
>> Dear GBrowse Dev Team,
>>
>> I found GBrowse2.0 really interesting and awesome when I started working on
>> it. But I faced issues to customize the sections in the page as I don't
>> require any sections other than "Overview" and "Details"
>>
>> Please suggest how can I disable or hide sections "Instructions", "Search",
>> "Tracks","Add Custom Track" and "Display Settings". I want only two -
>> "Overview" and "Details" - in my page. I google it and searched in GMOD
>> forums, but I didn't get any solutions.
>>
>> Please provide me the way I can resolve this
>>
>> Thanks in advance
>>
>> Praveen Raj
>> Bioinformatics Developer
>>
>> ------------------------------------------------------------------------------
>> Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT
>> is a gathering of tech-side developers & brand creativity professionals.
>> Meet
>> the minds behind Google Creative Lab, Visual Complexity, Processing, &
>> iPhoneDevCamp asthey present alongside digital heavyweights like Barbarian
>> Group, R/GA, & Big Spaceship. http://www.creativitycat.com
>> _______________________________________________
>> Gmod-gbrowse mailing list
>> Gmod-gbrowse@...
>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>>
>>
>
> Was this helpful?  Let us know at http://gmod.org/wiki/Help_Desk_Feedback
>
> Learn more about GMOD at:
>   SMBE: http://ccg.biology.uiowa.edu/smbe/symposia.php?action=view&sym_ID=27
>   Arthropod Genomics: http://www.k-state.edu/agc/symp2009/seminar.html
>   AGA Next Gen Seq in Non-Models: http://www.regonline.com/Nextgeneration
>
> ------------------------------------------------------------------------------
> Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT
> is a gathering of tech-side developers & brand creativity professionals. Meet
> the minds behind Google Creative Lab, Visual Complexity, Processing, &
> iPhoneDevCamp as they present alongside digital heavyweights like Barbarian
> Group, R/GA, & Big Spaceship. http://p.sf.net/sfu/creativitycat-com
> _______________________________________________
> Gmod-gbrowse mailing list
> Gmod-gbrowse@...
> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>

--
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

--
Praveen Raj S.
Associate - Life Sciences,
Mascon Global Limited,
758, Sector V, Udyog Vihar,
Gurgaon, Haryana State.
Pin:- 122 016
Moblie: 09911773253
------------------------------------------------------------------------------
OpenSolaris 2009.06 is a cutting edge operating system for enterprises
looking to deploy the next generation of Solaris that includes the latest
innovations from Sun and the OpenSource community. Download a copy and
enjoy capabilities such as Networking, Storage and Virtualization.
Go to: http://p.sf.net/sfu/opensolaris-get
_______________________________________________
Gmod-gbrowse mailing list
Gmod-gbrowse@...
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse