« Return to Thread: Re: A GBROWSE question
Re: A GBROWSE question
by Scott Cain-4
::
Rate this Message:
Hello Juan Manuel,
I'm cc'ing this to the GBrowse mailing list, since there are a lot of
really smart, helpful people who read this list.
I think what you want to do is possible with the stackedplot glyph,
but I've never used it personally, so I don't know if there are any
gotchas in using it. See the documentation locally with this command
line command:
> perldoc Bio::Graphics::Glyph::stackedplot
or read it at cpan:
http://search.cpan.org/~lds/Bio-Graphics-1.93/lib/Bio/Graphics/Glyph/stackedplot.pm
Scott
On Mon, Apr 13, 2009 at 3:31 PM, Juan Anzola <biojmal@...> wrote:
> Hello Scott, how are you?
>
> My name is Juan Anzola, I am a biologist interested in genomes and trying to
> use GBROWSE in my everyday work.
> I an sending you this email because there is something that I would like to
> do with GBROWSE, but I haven't been able to figure out how to do it.
>
> Here is the question:
> Is there any way I can create a GFF track with more than one type of
> quantitative information? I know how to create quantitative tracks with
> xyplot and I've been reading how to do it with the wiggle/BED format. But
> that is not exactly what I want to do. I want something similar to a STACKED
> XYPLOT with different boxes representing different types of data and the
> height of the boxes representing quantitative data. Is there any way to do
> this?
>
> Please take a look at the atached figure so you will understand what I mean.
> Thanks in advance for your help Scott.
>
> Regards,
>
> Juan Manuel
>
>
>
>
>
>
>
>
>
> --
> My Flickr Photos:
> http://www.flickr.com/photos/46611258@N00/sets/
>
--
------------------------------------------------------------------------
Scott Cain, Ph. D. scott at scottcain dot net
GMOD Coordinator (http://gmod.org/) 216-392-3087
Ontario Institute for Cancer Research
------------------------------------------------------------------------------
This SF.net email is sponsored by:
High Quality Requirements in a Collaborative Environment.
Download a free trial of Rational Requirements Composer Now!
http://p.sf.net/sfu/www-ibm-com
_______________________________________________
Gmod-gbrowse mailing list
Gmod-gbrowse@...
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
I'm cc'ing this to the GBrowse mailing list, since there are a lot of
really smart, helpful people who read this list.
I think what you want to do is possible with the stackedplot glyph,
but I've never used it personally, so I don't know if there are any
gotchas in using it. See the documentation locally with this command
line command:
> perldoc Bio::Graphics::Glyph::stackedplot
or read it at cpan:
http://search.cpan.org/~lds/Bio-Graphics-1.93/lib/Bio/Graphics/Glyph/stackedplot.pm
Scott
On Mon, Apr 13, 2009 at 3:31 PM, Juan Anzola <biojmal@...> wrote:
> Hello Scott, how are you?
>
> My name is Juan Anzola, I am a biologist interested in genomes and trying to
> use GBROWSE in my everyday work.
> I an sending you this email because there is something that I would like to
> do with GBROWSE, but I haven't been able to figure out how to do it.
>
> Here is the question:
> Is there any way I can create a GFF track with more than one type of
> quantitative information? I know how to create quantitative tracks with
> xyplot and I've been reading how to do it with the wiggle/BED format. But
> that is not exactly what I want to do. I want something similar to a STACKED
> XYPLOT with different boxes representing different types of data and the
> height of the boxes representing quantitative data. Is there any way to do
> this?
>
> Please take a look at the atached figure so you will understand what I mean.
> Thanks in advance for your help Scott.
>
> Regards,
>
> Juan Manuel
>
>
>
>
>
>
>
>
>
> --
> My Flickr Photos:
> http://www.flickr.com/photos/46611258@N00/sets/
>
--
------------------------------------------------------------------------
Scott Cain, Ph. D. scott at scottcain dot net
GMOD Coordinator (http://gmod.org/) 216-392-3087
Ontario Institute for Cancer Research
------------------------------------------------------------------------------
This SF.net email is sponsored by:
High Quality Requirements in a Collaborative Environment.
Download a free trial of Rational Requirements Composer Now!
http://p.sf.net/sfu/www-ibm-com
_______________________________________________
Gmod-gbrowse mailing list
Gmod-gbrowse@...
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
« Return to Thread: Re: A GBROWSE question
| Free embeddable forum powered by Nabble | Forum Help |
