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Re: Add your own track on chado-based GBrowse

by Scott Cain-4 :: Rate this Message:

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Hi Heekim,

I'm putting together a new release of Bio::DB::Das::Chado that will be
uploaded to cpan today and it usually takes a few days to propagate
out to mirrors.  If you want, you can modify your copy of
Bio::DB::Das::Chado::Segment with a very simple fix.  Add this
subroutine to Segment.pm:

sub rel2abs {
  shift;
  return @_;
}

and that should fix it.  Otherwise, when version 0.22 propagates out
to your favorite cpan mirror you can get it then.

Scott


On Thu, May 28, 2009 at 3:47 PM, Scott Cain <scott@...> wrote:

> I think this used to work, but now I get this message:
>
> Can't locate object method "rel2abs" via package
> "Bio::DB::Das::Chado::Segment" at
> /usr/local/lib/perl/5.8.8/Bio/Graphics/Browser.pm line 3072, <F> line
> 12.
>
> I'll look into a fix and get it up on cpan as soon as I can.
>
> Scott
>
>
> On Thu, May 28, 2009 at 3:14 PM, Lincoln Stein <lincoln.stein@...> wrote:
>> Is there an error in the apache error log?
>>
>> Lincoln
>>
>> On Thu, May 28, 2009 at 2:52 PM, heekim <heekim@...> wrote:
>>>
>>> Hi,
>>>
>>> Does the chado-based GBrowse support uploaded tracts?
>>> One of our ousers claimed that he cannot load his data tract.
>>> Following instruction, I tried to do it again.
>>> It seems that It doesn't work.
>>>
>>> Thank you
>>>
>>> Hee
>>> --
>>> View this message in context:
>>> http://www.nabble.com/Add-your-own-track-on-chado-based-GBrowse-tp23767794p23767794.html
>>> Sent from the gmod-gbrowse mailing list archive at Nabble.com.
>>>
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT
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>>
>>
>>
>> --
>> Lincoln D. Stein
>> Director, Informatics and Biocomputing Platform
>> Ontario Institute for Cancer Research
>> 101 College St., Suite 800
>> Toronto, ON, Canada M5G0A3
>> 416 673-8514
>> Assistant: Renata Musa <Renata.Musa@...>
>>
>> ------------------------------------------------------------------------------
>> Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT
>> is a gathering of tech-side developers & brand creativity professionals.
>> Meet
>> the minds behind Google Creative Lab, Visual Complexity, Processing, &
>> iPhoneDevCamp as they present alongside digital heavyweights like Barbarian
>> Group, R/GA, & Big Spaceship. http://p.sf.net/sfu/creativitycat-com
>> _______________________________________________
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>>
>>
>
>
>
> --
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.                                   scott at scottcain dot net
> GMOD Coordinator (http://gmod.org/)                     216-392-3087
> Ontario Institute for Cancer Research
>



--
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

------------------------------------------------------------------------------
Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT
is a gathering of tech-side developers & brand creativity professionals. Meet
the minds behind Google Creative Lab, Visual Complexity, Processing, &
iPhoneDevCamp as they present alongside digital heavyweights like Barbarian
Group, R/GA, & Big Spaceship. http://p.sf.net/sfu/creativitycat-com 
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