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Re: Gbrowse 2 installation in CentOS 5
by Scott Cain-4
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Hi Miquel,
That happens to me occasionally as well. First, make sure you have
the most current version of Bio::Graphics. If it still hangs during
that test, you can do a force install, as I think the test failure has
more to do with the test itself rather than how GBrowse works.
Scott
On Thu, Jun 4, 2009 at 11:31 AM, Miquel Ramia <miquel.ramia@...> wrote:
> Hi,
>
> I'm trying to install GBrowse2 in CentOS5 (running Gbrowse 1.69 with no
> problems), but I tried CPAN and manually downloading the package, and
> allways get the same error in ./Build test, The process "crash" in:
>
> t/03.render.t ............. 114/138
>
> (sometimes 112, sometimes 118) but it stops completely.
>
> Anyone with the same problem?
>
> I'll try installing GBrowse2 in another computer as well
>
> Scott Cain wrote:
>>
>> Hi Bala,
>>
>> Since GBrowse2 is still in development, there are no RPMs for it, so I
>> don't see how you could use yum to install it. Additionally, since
>> Bio::Graphics is under active development, RPM production for it is
>> typically going to lag behind (in fact, I'd be surprised if Allen and
>> Brian made an RPM for it yet at all). At best, you could get many of
>> the prereqs with yum. Also, I don't know what you mean when you write
>> you cannot install GMOD: do you mean GBrowse?
>>
>> What I would try for installing GBrowse is to use the cpan shell
>> (after you use yum to install gd-dev/libgd):
>>
>> sudo cpan
>> cpan> install LDS/GBrowse-1.994.tar.gz
>>
>> Scott
>>
>>
>>
>> On Thu, Jun 4, 2009 at 7:58 AM, Selvaraj, Balamuruganand (B)
>> <BSelvaraj@...> wrote:
>>
>>>
>>> Hi GMOD users,
>>>
>>> With installation of Gbrowse 2 not possible with windows, I am trying to
>>> install it in CentOS 5 using the Biopackages.net.
>>>
>>> However, I am facing issues with yum as it cannnot install Bio::Graphics
>>> or
>>> GMOD.
>>>
>>> Has anyone tried to install Gbrowse 2 using yum in CentOS 5.
>>>
>>> Thanks for your reply
>>>
>>> -Bala
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> OpenSolaris 2009.06 is a cutting edge operating system for enterprises
>>> looking to deploy the next generation of Solaris that includes the latest
>>> innovations from Sun and the OpenSource community. Download a copy and
>>> enjoy capabilities such as Networking, Storage and Virtualization.
>>> Go to: http://p.sf.net/sfu/opensolaris-get
>>> _______________________________________________
>>> Gmod-gbrowse mailing list
>>> Gmod-gbrowse@...
>>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>>>
>>>
>>>
>>
>>
>>
>>
>
>
--
------------------------------------------------------------------------
Scott Cain, Ph. D. scott at scottcain dot net
GMOD Coordinator (http://gmod.org/) 216-392-3087
Ontario Institute for Cancer Research
------------------------------------------------------------------------------
OpenSolaris 2009.06 is a cutting edge operating system for enterprises
looking to deploy the next generation of Solaris that includes the latest
innovations from Sun and the OpenSource community. Download a copy and
enjoy capabilities such as Networking, Storage and Virtualization.
Go to: http://p.sf.net/sfu/opensolaris-get
_______________________________________________
Gmod-gbrowse mailing list
Gmod-gbrowse@...
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
That happens to me occasionally as well. First, make sure you have
the most current version of Bio::Graphics. If it still hangs during
that test, you can do a force install, as I think the test failure has
more to do with the test itself rather than how GBrowse works.
Scott
On Thu, Jun 4, 2009 at 11:31 AM, Miquel Ramia <miquel.ramia@...> wrote:
> Hi,
>
> I'm trying to install GBrowse2 in CentOS5 (running Gbrowse 1.69 with no
> problems), but I tried CPAN and manually downloading the package, and
> allways get the same error in ./Build test, The process "crash" in:
>
> t/03.render.t ............. 114/138
>
> (sometimes 112, sometimes 118) but it stops completely.
>
> Anyone with the same problem?
>
> I'll try installing GBrowse2 in another computer as well
>
> Scott Cain wrote:
>>
>> Hi Bala,
>>
>> Since GBrowse2 is still in development, there are no RPMs for it, so I
>> don't see how you could use yum to install it. Additionally, since
>> Bio::Graphics is under active development, RPM production for it is
>> typically going to lag behind (in fact, I'd be surprised if Allen and
>> Brian made an RPM for it yet at all). At best, you could get many of
>> the prereqs with yum. Also, I don't know what you mean when you write
>> you cannot install GMOD: do you mean GBrowse?
>>
>> What I would try for installing GBrowse is to use the cpan shell
>> (after you use yum to install gd-dev/libgd):
>>
>> sudo cpan
>> cpan> install LDS/GBrowse-1.994.tar.gz
>>
>> Scott
>>
>>
>>
>> On Thu, Jun 4, 2009 at 7:58 AM, Selvaraj, Balamuruganand (B)
>> <BSelvaraj@...> wrote:
>>
>>>
>>> Hi GMOD users,
>>>
>>> With installation of Gbrowse 2 not possible with windows, I am trying to
>>> install it in CentOS 5 using the Biopackages.net.
>>>
>>> However, I am facing issues with yum as it cannnot install Bio::Graphics
>>> or
>>> GMOD.
>>>
>>> Has anyone tried to install Gbrowse 2 using yum in CentOS 5.
>>>
>>> Thanks for your reply
>>>
>>> -Bala
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> OpenSolaris 2009.06 is a cutting edge operating system for enterprises
>>> looking to deploy the next generation of Solaris that includes the latest
>>> innovations from Sun and the OpenSource community. Download a copy and
>>> enjoy capabilities such as Networking, Storage and Virtualization.
>>> Go to: http://p.sf.net/sfu/opensolaris-get
>>> _______________________________________________
>>> Gmod-gbrowse mailing list
>>> Gmod-gbrowse@...
>>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>>>
>>>
>>>
>>
>>
>>
>>
>
>
--
------------------------------------------------------------------------
Scott Cain, Ph. D. scott at scottcain dot net
GMOD Coordinator (http://gmod.org/) 216-392-3087
Ontario Institute for Cancer Research
------------------------------------------------------------------------------
OpenSolaris 2009.06 is a cutting edge operating system for enterprises
looking to deploy the next generation of Solaris that includes the latest
innovations from Sun and the OpenSource community. Download a copy and
enjoy capabilities such as Networking, Storage and Virtualization.
Go to: http://p.sf.net/sfu/opensolaris-get
_______________________________________________
Gmod-gbrowse mailing list
Gmod-gbrowse@...
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
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