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Re: Gbrowse 2 installation in CentOS 5

by Bala Selvaraj :: Rate this Message:

Scott,

Finally, I got the Gbrowse2 installed. I get the automated page with http://localhost/gbrowse2
However, when I click the Example database I get a blank page

I checked the configuration files both the Gbrowse.conf and yeast_simple.conf are present in locations
as dictated by the Gbrowse.conf

I am yet to check the Apache log file.

~Bala

-----Original Message-----
From: Scott Cain [mailto:scott@...]
Sent: Thursday, June 04, 2009 9:53 AM
To: Selvaraj, Balamuruganand (B)
Cc: gmod-gbrowse@...
Subject: Re: [Gmod-gbrowse] Gbrowse 2 installation in CentOS 5

Hi Bala,

Since GBrowse2 is still in development, there are no RPMs for it, so I
don't see how you could use yum to install it. Additionally, since
Bio::Graphics is under active development, RPM production for it is
typically going to lag behind (in fact, I'd be surprised if Allen and
Brian made an RPM for it yet at all). At best, you could get many of
the prereqs with yum. Also, I don't know what you mean when you write
you cannot install GMOD: do you mean GBrowse?

What I would try for installing GBrowse is to use the cpan shell
(after you use yum to install gd-dev/libgd):

sudo cpan
cpan> install LDS/GBrowse-1.994.tar.gz

Scott

On Thu, Jun 4, 2009 at 7:58 AM, Selvaraj, Balamuruganand (B)
<BSelvaraj@...> wrote:

>
> Hi GMOD users,
>
> With installation of Gbrowse 2 not possible with windows, I am trying to
> install it in CentOS 5 using the Biopackages.net.
>
> However, I am facing issues with yum as it cannnot install Bio::Graphics or
> GMOD.
>
> Has anyone tried to install Gbrowse 2 using yum in CentOS 5.
>
> Thanks for your reply
>
> -Bala
>
> ------------------------------------------------------------------------------
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--
------------------------------------------------------------------------
Scott Cain, Ph. D. scott at scottcain dot net
GMOD Coordinator (http://gmod.org/) 216-392-3087
Ontario Institute for Cancer Research

------------------------------------------------------------------------------
OpenSolaris 2009.06 is a cutting edge operating system for enterprises
looking to deploy the next generation of Solaris that includes the latest
innovations from Sun and the OpenSource community. Download a copy and
enjoy capabilities such as Networking, Storage and Virtualization.
Go to: http://p.sf.net/sfu/opensolaris-get
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