Re: Gbrowse 2 installation in CentOS 5

> Hi,
>
> I know I must be doing something wrong.
> When I check the Apache Error Logs, I get this error
>
> [Thu Jun 04 17:59:20 2009] [error] [client 127.0.0.1] (13)Permission denied: exec of '/var/www/cgi-bin/gb2/gbrowse2'
> failed
> [Thu Jun 04 17:59:20 2009] [error] [client 127.0.0.1] Premature end of script headers: gbrowse, referer http://localhost/gbrowse2
>
> Although, the first log points towards Permission access :: My admin is also getting the same error.
>
> If anybody else, had same problem and solved it, Pl let me know.
>
> Thanks
> -Bala
>
>
> -----Original Message-----
> From: Selvaraj, Balamuruganand (B)
> Sent: Thursday, June 04, 2009 4:59 PM
> To: 'Scott Cain'
> Cc: gmod-gbrowse@...
> Subject: RE: [Gmod-gbrowse] Gbrowse 2 installation in CentOS 5
>
>
> Scott,
>
> Finally, I got the Gbrowse2 installed. I get the automated page with http://localhost/gbrowse2
> However, when I click the Example database I get a blank page
>
> I checked the configuration files both the Gbrowse.conf and yeast_simple.conf are present in locations
> as dictated by the Gbrowse.conf
>
> I am yet to check the Apache log file.
>
> ~Bala
>
> -----Original Message-----
> From: Scott Cain [mailto:scott@...]
> Sent: Thursday, June 04, 2009 9:53 AM
> To: Selvaraj, Balamuruganand (B)
> Cc: gmod-gbrowse@...
> Subject: Re: [Gmod-gbrowse] Gbrowse 2 installation in CentOS 5
>
> Hi Bala,
>
> Since GBrowse2 is still in development, there are no RPMs for it, so I
> don't see how you could use yum to install it. Additionally, since
> Bio::Graphics is under active development, RPM production for it is
> typically going to lag behind (in fact, I'd be surprised if Allen and
> Brian made an RPM for it yet at all).  At best, you could get many of
> the prereqs with yum.  Also, I don't know what you mean when you write
> you cannot install GMOD: do you mean GBrowse?
>
> What I would try for installing GBrowse is to use the cpan shell
> (after you use yum to install gd-dev/libgd):
>
>  sudo cpan
>  cpan> install LDS/GBrowse-1.994.tar.gz
>
> Scott
>
>
>
> On Thu, Jun 4, 2009 at 7:58 AM, Selvaraj, Balamuruganand (B)
> <BSelvaraj@...> wrote:
>>
>> Hi GMOD users,
>>
>> With installation of Gbrowse 2 not possible with windows, I am trying to
>> install it in CentOS 5 using the Biopackages.net.
>>
>> However, I am facing issues with yum as it cannnot install Bio::Graphics or
>> GMOD.
>>
>> Has anyone  tried to install Gbrowse 2 using yum in CentOS 5.
>>
>> Thanks for your reply
>>
>> -Bala
>>
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>
>
>
> --
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.                                   scott at scottcain dot net
> GMOD Coordinator (http://gmod.org/)                     216-392-3087
> Ontario Institute for Cancer Research
>