There are several flavors of TIGR XML for rice and arabidoposis, and
other projects etc, I don't know which is tracked with the current
tigrxml version unfortunately but one can compare the test files in t/
data to the versions downloaded to see what is currently supported.
Usually the gbk will be more consistently parseable but we can try and
work it out if it is a sensible transformation.
On Jun 26, 2009, at 2:55 AM, Moore, Jonathan wrote:
> I'm trying to parse the TAIR9 Arabidopsis release from the TIGR XML
> files at the TAIR FTP site.
>
> I've tried SeqIO with both tigr and tigrxml formats but both are
> giving errors in 1.6.0. Has anyone advice on whether it's likely to
> be doable, or should I wait til the .gb files are available?
>
> Jay Moore
>
> _______________________________________________
> Bioperl-l mailing list
>
Bioperl-l@...
>
http://lists.open-bio.org/mailman/listinfo/bioperl-l--
Jason Stajich
jason@...
_______________________________________________
Bioperl-l mailing list
Bioperl-l@...
http://lists.open-bio.org/mailman/listinfo/bioperl-l
