« Return to Thread: Ideograms are drawn incorrectly after upgrading to GBrowse 1.70
Hi All,
I recently upgraded to gbrowse 1.70. The upgrade seems to have worked except now the ideogram tracks that displayed correctly before no longer display correctly. It seems as if gbrowse is drawing each region of the chromosome as a separate chromosome. The border cuts between regions making it hard to tell where the region boundries are.(This is a little hard to explain so I included an attached Image) I noticed there is a new version of ideogram.pm dated 2009/05/20 the one I was previously using was 2008/04/17. To see if this was the issue I checked to see if the old ideogram.pm would work, but the same issue still arises. I have also include my configuration settings and an example from the gff below.
Thanks,
Bill
[CYT:overview]
feature = chromosome_band centromere
glyph = ideogram
fgcolor = black
bgcolor = gneg:white gpos25:silver gpos50:gray gpos:gray gpos75:darkgray gpos100:black acen:cen gvar:var
arcradius = 5
height = 15
bump = 0
chr11 UCSC chromosome_band 1 1000000 . . . Parent=11;label=tip;Alias tip;stain tip
chr11 UCSC centromere 1000001 3000000 . . . Parent=11;label=11_cent;Alias 11_cent
chr11 UCSC chromosome_band 3000000 9289765 . . . Parent=11;label=A1;Alias A1;stain gpos100
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« Return to Thread: Ideograms are drawn incorrectly after upgrading to GBrowse 1.70
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