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Re: Query regarding backend MySQL database of Gbrowse

by Scott Cain-4 :: Rate this Message:

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Hello Niharika,

I've only ever seen this reported once before and that was on a
Windows system as well.  Is there any chance that you could either try
the same thing on a Mac or Linux system to see if this is really
Windows specific, or send me or let me know where I can download the
data you are using so I can try it?

Thanks,
Scott


On Mon, Jun 1, 2009 at 5:44 AM, niharika sharma <niharika@...> wrote:

> Hello,
>
> I have installed and am using Gbrowse for building an application for our
> lab. I have installed MySQL and using Gbrowse tutorial have carried out
> following steps successfully.
>
> C:\Windows> ppm
> ppm>   install DBD::mysql
> ppm>   quit
>
> % mysql -uroot -p
>
> Enter password: *********
>
> mysql>   create database rice;
> Query OK, 1 row affected (0.04 sec)
>
> mysql>   grant all privileges on rice.* to ODBC@localhost;
> Query OK, 0 rows affected (0.00 sec)
>
>
> mysql>   grant select on rice.* to nobody@localhost;
> Query OK, 0 rows affected (0.00 sec)
>
> mysql>   quit
> Bye
>
> %   bp_seqfeature_load.pl -c -f -d rice rice_all.gff3
> loading rice_all.fa...
>
>
> Building object tree... 0.00s
> Loading bulk data into database... 0.00s
> load time:  0.02s
> loading rice_all.gff3...
>
>
> Building object tree... 0.00s
> Loading bulk data into database... 0.02s
>
> After loading bulk data command it gives an error which I am attaching with
>
> the mail.Kindly go through it and let me know why this error comes and
> how I would be able to load the entire data successfully into my
>
> backend database of MySQL.
>
> Awaiting for response.
>
>
>
>
> Regards,
>
>
> Niharika Sharma.
> M.Phil Plant molecular Biology student.
>
>
>
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--
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

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Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT
is a gathering of tech-side developers & brand creativity professionals. Meet
the minds behind Google Creative Lab, Visual Complexity, Processing, &
iPhoneDevCamp as they present alongside digital heavyweights like Barbarian
Group, R/GA, & Big Spaceship. http://p.sf.net/sfu/creativitycat-com 
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