Re: Query regarding backend MySQL database of Gbrowse

> Dear Scott,
>
> Did you see the porblem at your part?
>
> I am waiting to hear from you.
>
> Regards,
> Niharika.
>
> On Tue, Jun 2, 2009 at 11:47 AM, niharika sharma <niharika@...>
> wrote:
>>
>> Dear Scott,
>>
>> I am trying it Mac system also and would also try it using installations
>> done on some other drive than C. Further I am sending you conf file as an
>> attachment and GFF3 file you can download from the link
>>
>> ftp://ftp.plantbiology.msu.edu/pub/data/Eukaryotic_Projects/o_sativa/annotation_dbs/pseudomolecules/version_6.0/all.dir
>> The file name is all.gff3. Please check the error on your part.
>>
>> Hoping to hear from you soon.
>>
>> Regards,
>> Niharika.
>>
>>
>>
>> On Mon, Jun 1, 2009 at 8:12 PM, Scott Cain <scott@...> wrote:
>>>
>>> Hello Niharika,
>>>
>>> I've only ever seen this reported once before and that was on a
>>> Windows system as well.  Is there any chance that you could either try
>>> the same thing on a Mac or Linux system to see if this is really
>>> Windows specific, or send me or let me know where I can download the
>>> data you are using so I can try it?
>>>
>>> Thanks,
>>> Scott
>>>
>>>
>>> On Mon, Jun 1, 2009 at 5:44 AM, niharika sharma <niharika@...>
>>> wrote:
>>> > Hello,
>>> >
>>> > I have installed and am using Gbrowse for building an application for
>>> > our
>>> > lab. I have installed MySQL and using Gbrowse tutorial have carried out
>>> > following steps successfully.
>>> >
>>> > C:\Windows> ppm
>>> > ppm>   install DBD::mysql
>>> > ppm>   quit
>>> >
>>> > % mysql -uroot -p
>>> >
>>> > Enter password: *********
>>> >
>>> > mysql>   create database rice;
>>> > Query OK, 1 row affected (0.04 sec)
>>> >
>>> > mysql>   grant all privileges on rice.* to ODBC@localhost;
>>> > Query OK, 0 rows affected (0.00 sec)
>>> >
>>> >
>>> > mysql>   grant select on rice.* to nobody@localhost;
>>> > Query OK, 0 rows affected (0.00 sec)
>>> >
>>> > mysql>   quit
>>> > Bye
>>> >
>>> > %   bp_seqfeature_load.pl -c -f -d rice rice_all.gff3
>>> > loading rice_all.fa...
>>> >
>>> >
>>> > Building object tree... 0.00s
>>> > Loading bulk data into database... 0.00s
>>> > load time:  0.02s
>>> > loading rice_all.gff3...
>>> >
>>> >
>>> > Building object tree... 0.00s
>>> > Loading bulk data into database... 0.02s
>>> >
>>> > After loading bulk data command it gives an error which I am attaching
>>> > with
>>> >
>>> > the mail.Kindly go through it and let me know why this error comes and
>>> > how I would be able to load the entire data successfully into my
>>> >
>>> > backend database of MySQL.
>>> >
>>> > Awaiting for response.
>>> >
>>> >
>>> >
>>> >
>>> > Regards,
>>> >
>>> >
>>> > Niharika Sharma.
>>> > M.Phil Plant molecular Biology student.
>>> >
>>> >
>>> >
>>> >
>>> > ------------------------------------------------------------------------------
>>> > Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT
>>> > is a gathering of tech-side developers & brand creativity
>>> > professionals.
>>> > Meet
>>> > the minds behind Google Creative Lab, Visual Complexity, Processing, &
>>> > iPhoneDevCamp as they present alongside digital heavyweights like
>>> > Barbarian
>>> > Group, R/GA, & Big Spaceship. http://p.sf.net/sfu/creativitycat-com
>>> > _______________________________________________
>>> > Gmod-gbrowse mailing list
>>> > Gmod-gbrowse@...
>>> > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>>> >
>>> >
>>>
>>>
>>>
>>> --
>>> ------------------------------------------------------------------------
>>> Scott Cain, Ph. D.                                   scott at scottcain
>>> dot net
>>> GMOD Coordinator (http://gmod.org/)                     216-392-3087
>>> Ontario Institute for Cancer Research
>>
>
>