The Bioperl solution piggybacks on EMBOSS. See Chris Fields' comment on this
post from Neil Saunders' blog:
http://nsaunders.wordpress.com/2007/07/25/howto-generate-random-sequences-using-emboss-and-perl/You can also do this outside of BioPerl using shuffle from Sean Eddy's SQUID
package, available here:
[ SQUID ftp site ] <ftp://selab.janelia.org/pub/software/squid/>
<ftp://selab.janelia.org/pub/software/squid/>
If not - what should the namespace be for such a module should it be undone
> and desirable?
Perhaps add it to Bio::SeqUtils?
Dave
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