« Return to Thread: Re: SNP Analysis : Parser for Polybayes result
Re: SNP Analysis : Parser for Polybayes result
by lparsons
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Hello
I am the author of that web page, which is no longer up because the lab itself no longer exists.
There should have been a redirect link back in 2006 when you wrote that message, however the redirect link itself would no longer work at this point. I have attached the perl script that was mentioned in the link, feel free to use it however you like.
I apologize for not getting this to you sooner, hopefully someone can make use of this old script.
SNP_analysis.pl
I am the author of that web page, which is no longer up because the lab itself no longer exists.
There should have been a redirect link back in 2006 when you wrote that message, however the redirect link itself would no longer work at this point. I have attached the perl script that was mentioned in the link, feel free to use it however you like.
I apologize for not getting this to you sooner, hopefully someone can make use of this old script.
SNP_analysis.pl
i.j.nijman wrote:forgotten link: http://www.ccgb.umn.edu/~lparsons/downloads/index.html
i.j.nijman@gmail.com wrote:
> Hi,
>
> Have you seen this page? There's a simple script which parses the
> polybayes output.
>
> Cheers,
> Ies Nijman
>
> Elango, Palchamy (ICRISAT-IN) wrote:
> > I am using Polybayes program [Author: Prof. Gabor T. Marth] for SNP analysis.
> >
> > I wish to parse and extract SNP associated information from the output (textual mulitple sequence alignment) of Polybayes program.
> >
> > Alternatively I am trying out the possibilities of converting the polybayes alignment output into any standard multiple alignment format, so that I can able to use other SNP analysis programs that read multiple sequence alignment files as input.
> >
> > I wish to use your parser script or any bioperl / biojava module.
> > Does anyone know or use any bioperl /biopython /biojava module ?
> > I shall be grateful if you could kindly provide me some tips or additional information on this.
> >
> > Thanking you
> > Elango
> > P.Elango
> >
> > GT-Biotechnology,
> > International Crops Research Institute for the Semi-Arid Tropics (ICRISAT),
> > Patancheru - 502 324, Andhra Pradesh, India.
> > Work: +(91) 40 307 13321 , Home: +(91) 40 559 98770 / +(91) 98854 98770 (Mobile)
> > pelango@cgiar.org <mailto:pelango@cgiar.org> www.cgiar.org <http://www.cgiar.org> elango@palchamy.com <mailto:elango@palchamy.com>
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« Return to Thread: Re: SNP Analysis : Parser for Polybayes result
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