« Return to Thread: error to reinstall GBrowse v2
Re: error to reinstall GBrowse v2
by Biliards
::
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Hi all,
I test and reinstall all in two server. I'm using cvs version and I
have got similar results:
* gbrowse works very good with these url:
http://gbrowse.cribi.unipd.it/demo/gbrowse/yeast/
http://gbrowse.cribi.unipd.it/public/gbrowse/vitis_vinifera_8x/
* these errors with these url:
http://gbrowse.cribi.unipd.it/mdemo/gbrowse/yeast/
alternative error when I run different databases set..
[Thu Jun 04 00:36:10 2009] [error] [client 147.162.3.222] failed to
resolve handler `ModPerl::Registry': Attempt to reload
ModPerl/Registry.pm aborted.\nCompilation failed in require at (eval
4) line 3.\n
..or I rerun egual databases set
[Thu Jun 04 00:36:19 2009] [error] [client 147.162.3.222] failed to
resolve handler `ModPerl::Registry': Can't locate loadable object for
module Apache2::ServerUtil in @INC (@INC contains: /etc/perl
/usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5
/usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10
/usr/local/lib/site_perl . /etc/apache2) at
/usr/lib/perl5/Apache2/XSLoader.pm line 31\nCompilation failed in
require at /usr/lib/perl5/ModPerl/RegistryCooker.pm line 30.\nBEGIN
failed--compilation aborted at
/usr/lib/perl5/ModPerl/RegistryCooker.pm line 30.\nCompilation failed
in require at (eval 3) line 3.\n\t...propagated at
/usr/share/perl/5.10/base.pm line 92.\nBEGIN failed--compilation
aborted at /usr/lib/perl5/ModPerl/Registry.pm line 26.\nCompilation
failed in require at (eval 2) line 3.\n
* these errors with these url:
http://gbrowse.cribi.unipd.it/fdemo/gbrowse/yeast/
Invalid source at
/usr/local/lib/perl/5.10.0/Bio/Graphics/Browser/Render.pm line 54
Status: 302 Found
Location: /yeast/
Set-Cookie: gbrowse_sess=755803d9290c97b00a7fb30f1b14f516; path=/;
expires=Fri, 03-Jul-2009 22:39:58 GMT
Date: Wed, 03 Jun 2009 22:39:58 GMT
Cache-control: no-cache
Content-Type: text/html; charset=ISO-8859-1
<!DOCTYPE html
...
</html>[Thu Jun 04 00:39:58 2009] [warn] (104)Connection reset by
peer: mod_fcgid: read data from fastcgi server error.
[Thu Jun 04 00:39:58 2009] [error] [client 147.162.3.222] Premature
end of script headers: gbrowse
[Thu Jun 04 00:39:59 2009] [notice] mod_fcgid: process
/usr/lib/cgi-bin/public/gbrowse(13915) exit(communication error),
terminated by calling exit(), return code: 0
I have got last version about:
Bio::Graphics::Browser is up to date (1.994).
Apache2::ServerUtil is up to date (2.000004).
Have you got any ideas about these errors?
Best,
Alessandra.
On Wed, Jun 3, 2009 at 6:48 PM, Alessandra <alessandra.bilardi@...> wrote:
> I don't understand because if I run command line:
> perl -MCPAN -e 'install Apache2::ServerUtil'
>
> CPAN: Storable loaded ok (v2.18)
> Going to read /root/.cpan/Metadata
> Database was generated on Wed, 03 Jun 2009 01:29:51 GMT
> CPAN: YAML loaded ok (v0.66)
> Going to read /root/.cpan/build/
> ............................................................................DONE
> Found 1 old build, restored the state of 1
> Apache2::ServerUtil is up to date (2.000004).
>
> and idem about I run:
> locate Apache2/ServerUtil
>
> /usr/lib/perl5/Apache2/ServerUtil.pm
>
> Ale.
>
> On Wed, Jun 3, 2009 at 5:49 PM, <zph@...> wrote:
>> On Wed, 3 Jun 2009, Alessandra wrote:
>> [snip]
>> [Wed Jun 03 15:41:26 2009] [error] [client 192.168.20.79] failed to
>> resolve handler `ModPerl::Registry': Can't locate loadable object for
>> module Apache2::ServerUtil in @INC (@INC contains: /etc/perl
>> [snip]
>>
>> This means the perl module Apache2::ServerUtil isn't installed
>> on your server or cannot be found at run time.
>>
>> Regards,
>>
>> Zong-Pei
>>
>>
>
>
>
> --
> Alessandra Bilardi, Ph. D.
> ----
> CRIBI, University of Padova, Italy
> Via Ugo Bassi, 58/B - 35121 Padova
> Tel +390498276165 Fax +390498276159
> http://www.linkedin.com/in/bilardi
> ----
> La semplicità è la più alta forma di perfezione (Leonardo Da Vinci)
> Keep simple, stupid (KISS, IT)
> ----
>
--
Alessandra Bilardi, Ph. D.
----
CRIBI, University of Padova, Italy
Via Ugo Bassi, 58/B - 35121 Padova
Tel +390498276165 Fax +390498276159
http://www.linkedin.com/in/bilardi
----
La semplicità è la più alta forma di perfezione (Leonardo Da Vinci)
Keep simple, stupid (KISS, IT)
----
------------------------------------------------------------------------------
OpenSolaris 2009.06 is a cutting edge operating system for enterprises
looking to deploy the next generation of Solaris that includes the latest
innovations from Sun and the OpenSource community. Download a copy and
enjoy capabilities such as Networking, Storage and Virtualization.
Go to: http://p.sf.net/sfu/opensolaris-get
_______________________________________________
Gmod-gbrowse mailing list
Gmod-gbrowse@...
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
I test and reinstall all in two server. I'm using cvs version and I
have got similar results:
* gbrowse works very good with these url:
http://gbrowse.cribi.unipd.it/demo/gbrowse/yeast/
http://gbrowse.cribi.unipd.it/public/gbrowse/vitis_vinifera_8x/
* these errors with these url:
http://gbrowse.cribi.unipd.it/mdemo/gbrowse/yeast/
alternative error when I run different databases set..
[Thu Jun 04 00:36:10 2009] [error] [client 147.162.3.222] failed to
resolve handler `ModPerl::Registry': Attempt to reload
ModPerl/Registry.pm aborted.\nCompilation failed in require at (eval
4) line 3.\n
..or I rerun egual databases set
[Thu Jun 04 00:36:19 2009] [error] [client 147.162.3.222] failed to
resolve handler `ModPerl::Registry': Can't locate loadable object for
module Apache2::ServerUtil in @INC (@INC contains: /etc/perl
/usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5
/usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10
/usr/local/lib/site_perl . /etc/apache2) at
/usr/lib/perl5/Apache2/XSLoader.pm line 31\nCompilation failed in
require at /usr/lib/perl5/ModPerl/RegistryCooker.pm line 30.\nBEGIN
failed--compilation aborted at
/usr/lib/perl5/ModPerl/RegistryCooker.pm line 30.\nCompilation failed
in require at (eval 3) line 3.\n\t...propagated at
/usr/share/perl/5.10/base.pm line 92.\nBEGIN failed--compilation
aborted at /usr/lib/perl5/ModPerl/Registry.pm line 26.\nCompilation
failed in require at (eval 2) line 3.\n
* these errors with these url:
http://gbrowse.cribi.unipd.it/fdemo/gbrowse/yeast/
Invalid source at
/usr/local/lib/perl/5.10.0/Bio/Graphics/Browser/Render.pm line 54
Status: 302 Found
Location: /yeast/
Set-Cookie: gbrowse_sess=755803d9290c97b00a7fb30f1b14f516; path=/;
expires=Fri, 03-Jul-2009 22:39:58 GMT
Date: Wed, 03 Jun 2009 22:39:58 GMT
Cache-control: no-cache
Content-Type: text/html; charset=ISO-8859-1
<!DOCTYPE html
...
</html>[Thu Jun 04 00:39:58 2009] [warn] (104)Connection reset by
peer: mod_fcgid: read data from fastcgi server error.
[Thu Jun 04 00:39:58 2009] [error] [client 147.162.3.222] Premature
end of script headers: gbrowse
[Thu Jun 04 00:39:59 2009] [notice] mod_fcgid: process
/usr/lib/cgi-bin/public/gbrowse(13915) exit(communication error),
terminated by calling exit(), return code: 0
I have got last version about:
Bio::Graphics::Browser is up to date (1.994).
Apache2::ServerUtil is up to date (2.000004).
Have you got any ideas about these errors?
Best,
Alessandra.
On Wed, Jun 3, 2009 at 6:48 PM, Alessandra <alessandra.bilardi@...> wrote:
> I don't understand because if I run command line:
> perl -MCPAN -e 'install Apache2::ServerUtil'
>
> CPAN: Storable loaded ok (v2.18)
> Going to read /root/.cpan/Metadata
> Database was generated on Wed, 03 Jun 2009 01:29:51 GMT
> CPAN: YAML loaded ok (v0.66)
> Going to read /root/.cpan/build/
> ............................................................................DONE
> Found 1 old build, restored the state of 1
> Apache2::ServerUtil is up to date (2.000004).
>
> and idem about I run:
> locate Apache2/ServerUtil
>
> /usr/lib/perl5/Apache2/ServerUtil.pm
>
> Ale.
>
> On Wed, Jun 3, 2009 at 5:49 PM, <zph@...> wrote:
>> On Wed, 3 Jun 2009, Alessandra wrote:
>> [snip]
>> [Wed Jun 03 15:41:26 2009] [error] [client 192.168.20.79] failed to
>> resolve handler `ModPerl::Registry': Can't locate loadable object for
>> module Apache2::ServerUtil in @INC (@INC contains: /etc/perl
>> [snip]
>>
>> This means the perl module Apache2::ServerUtil isn't installed
>> on your server or cannot be found at run time.
>>
>> Regards,
>>
>> Zong-Pei
>>
>>
>
>
>
> --
> Alessandra Bilardi, Ph. D.
> ----
> CRIBI, University of Padova, Italy
> Via Ugo Bassi, 58/B - 35121 Padova
> Tel +390498276165 Fax +390498276159
> http://www.linkedin.com/in/bilardi
> ----
> La semplicità è la più alta forma di perfezione (Leonardo Da Vinci)
> Keep simple, stupid (KISS, IT)
> ----
>
--
Alessandra Bilardi, Ph. D.
----
CRIBI, University of Padova, Italy
Via Ugo Bassi, 58/B - 35121 Padova
Tel +390498276165 Fax +390498276159
http://www.linkedin.com/in/bilardi
----
La semplicità è la più alta forma di perfezione (Leonardo Da Vinci)
Keep simple, stupid (KISS, IT)
----
------------------------------------------------------------------------------
OpenSolaris 2009.06 is a cutting edge operating system for enterprises
looking to deploy the next generation of Solaris that includes the latest
innovations from Sun and the OpenSource community. Download a copy and
enjoy capabilities such as Networking, Storage and Virtualization.
Go to: http://p.sf.net/sfu/opensolaris-get
_______________________________________________
Gmod-gbrowse mailing list
Gmod-gbrowse@...
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
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