« Return to Thread: gbrowse_detail links lost on navigation
Re: gbrowse_detail links lost on navigation
by Syed Mustafa Hussain
::
Rate this Message:
Hi Scott,
I use 1.69.025 version. Javascript looks same to me for both pages. I have attached both page-source, if you can figure it out.
Thanks,
Mustafa.
--- On Fri, 6/5/09, Scott Cain <scott@...> wrote:
> From: Scott Cain <scott@...>
> Subject: Re: [Gmod-gbrowse] gbrowse_detail links lost on navigation
> To: "Syed Mustafa Hussain" <comp_sea@...>
> Cc: gmod-gbrowse@...
> Date: Friday, June 5, 2009, 11:53 PM
> Hi Mustafa,
>
> It sounds like a javascript problem. What version of
> GBrowse are you
> using? Have you tried looking at the html source of
> the page when it
> is working versus when it is not to see if there is a
> difference?
> Perhaps some javascript or css files are being cached by
> your browser
> that are causing problem. Perhaps if you clear out
> the cache it might
> help.
>
> Scott
>
>
> On Fri, Jun 5, 2009 at 1:05 PM, Syed Mustafa Hussain<comp_sea@...>
> wrote:
> >
> > Hi,
> >
> > I am having problem with gbrowse_detail links, they
> work fine on the first page, but as soon as I navigate to
> some other region of genome I loose these links. Upon
> clicking on a feature it just recenter the image instead of
> going to gbrowse_details page. I also loose the grid with
> link. Does someone knows how to fix it?
> >
> > Thanks,
> > Mustafa Syed.
> >
> >
> >
> >
> >
> ------------------------------------------------------------------------------
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>
> --
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.
>
> scott at scottcain dot net
> GMOD Coordinator (http://gmod.org/)
> 216-392-3087
> Ontario Institute for Cancer Research
>
<!DOCTYPE html
PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" lang="en-us" xml:lang="en-us">
<head>
<title>Saccharophagus degradans 2-40 (NC_007912): SDE-CHROM:3423537..3433537</title>
<link type="text/css" media="all" rel="stylesheet" href="/gbrowse/gbrowse.css" />
<link rel="stylesheet" type="text/css" href="/gbrowse/tracks.css" />
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<script src="/gbrowse/js/bookmark.js" type="text/javascript"></script>
<script src="/gbrowse/js/toggle.js" type="text/javascript"></script>
<meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1" />
</head>
<body onload="Overview.prototype.initialize(); Details.prototype.initialize()">
<script>
var small_balloon = new Balloon;
BalloonConfig(small_balloon);
small_balloon.images = '/gbrowse/images/balloons';
small_balloon.balloonImage = 'balloon.png';
small_balloon.ieImage = 'balloon_ie.png';
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<h1>Saccharophagus degradans 2-40 (NC_007912)</h1><form method="post" action="/cgi-bin/gbrowse/SDE-CHROM/#search" enctype="multipart/form-data" name="mainform">
<table class="searchtitle" border="0" cellspacing="0" width="100%"><tr><td align="left" colspan="2"></td></tr> <tr><th class="linkmenu" align="left" colspan="2"><a href="javascript:bookmarksite('GBrowse Saccharophagus degradans 2-40 (NC_007912)','http://cricket.ornl.gov/cgi-bin/gbrowse/SDE-CHROM/?start=3423537;stop=3433537;ref=SDE-CHROM;width=640;version=100;id=4a7158f8ab7e9206b6c8d9d700323422;label=BeoCyc_TU')">[Bookmark this]</a> <a href="#upload">[Upload your own data]</a> <a href="?rand=d8e41;head=0">[Hide banner]</a> <a onmousedown="balloon.showTooltip(event,'url:?share_track=all')" href="#">[Share these tracks]</a> <a target="_blank" href="?help=link_image;flip=0;cache=0.245076228437153">[Link to Image]</a> <a target="_blank" href="?help=svg_image;flip=0;cache=0.498944524982111">[High-res Image]</a> <a target="help" href="?help=general">[Help]</a> <a class="reset_button" href="?reset=1">[Reset]</a></th></tr></table><a name="search"><div><div class="ctl_hidden" onclick="visibility('search_panel',1)" id="search_panel_show" style="display:none"><img src="/gbrowse/images/buttons/plus.png" alt="+" /> <span class="tctl"><b>Search</b></span></div><div class="ctl_visible" onclick="visibility('search_panel',0)" id="search_panel_hide" style="display:inline"><img src="/gbrowse/images/buttons/minus.png" alt="-" /> <span class="tctl"><b>Search</b></span></div> <div class="el_visible" id="search_panel" style="display:inline"><table class="searchtitle" border="0" cellspacing="0" width="100%"><tr class="searchbody"><td align="left" colspan="2"></td></tr> <tr class="searchbody"><td align="left"><b>Landmark or Region</b>:<br /><input type="text" name="name" value="SDE-CHROM:3423537..3433537" size="25" /><input type="submit" name="Search" value="Search" /></td> <td align="left" colspan="1"><b>Reports & Analysis</b>:<br /><select name="plugin" >
<option selected="selected" value="GFFDumper">Download GFF File</option>
</select> <input type="submit" name="plugin_action" value="Configure..." /> <b><input type="submit" name="plugin_action" value="Go" /></b></td></tr> <tr class="searchbody" style="padding-top: 5px"><td align="left"><b>Data Source</b><br /><select name="source" onchange="document.mainform.submit()">
<option value="ACE-CHROM">Acidothermus cellulolyticus (NC_008578)</option>
<option value="ATHE-CHROM">Anaerocellum thermophilum (NC_012034)</option>
<option value="ATHE-PLASMID1">Anaerocellum thermophilum (NC_012036)</option>
<option value="ATHE-PLASMID2">Anaerocellum thermophilum (NC_012037)</option>
<option value="AZO-CHROM">Azoarcus sp. BH72 (NC_008702)</option>
<option value="SUB-CHROM">Bacillus subtilis 168 (NC_000964)</option>
<option value="BPH-CHROMOSOME2">Burkholderia phytofirmans PsJN (NC_010676)</option>
<option value="BPH-PLASMID">Burkholderia phytofirmans PsJN (NC_010679)</option>
<option value="BPH-CHROMOSOME1">Burkholderia phytofirmans PsJN (NC_010681)</option>
<option value="c_thermo">C. thermocellum ATCC 27405 (CP000568)</option>
<option value="CSA-CHROM">Caldicellulosiruptor saccharolyticus DSM 8903 (NC_009437)</option>
<option value="CAC-PLASMID">Clostridium acetobutylicum ATCC 824 (NC_001988)</option>
<option value="CAC-CHROM">Clostridium acetobutylicum ATCC 824 (NC_003030)</option>
<option value="CBE-CHROM">Clostridium beijerinckii NCIMB 8052 (NC_009617)</option>
<option value="CCE-CHROM">Clostridium cellulolyticum H10 (NC_011898)</option>
<option value="CPE-PLASMID">Clostridium perfringens 13 (NC_003042)</option>
<option value="CPE-CHROM">Clostridium perfringens 13 (NC_003366)</option>
<option value="CPH-CHROM">Clostridium phytofermentans ISDg (NC_010001)</option>
<option value="CTH-CHROM">Clostridium thermocellum ATCC 27405 (NC_009012)</option>
<option value="CHU-CHROM">Cytophaga hutchinsonii ATCC 33406 (NC_008255)</option>
<option value="ENT-PLASMID1">Enterobacter sp. 638 (NC_009425)</option>
<option value="ENT-CHROMOSOME">Enterobacter sp. 638 (NC_009436)</option>
<option value="FJO-CHROM">Flavobacterium johnsoniae UW101 (NC_009441)</option>
<option value="GDI-PLASMID2">Gluconacetobacter diazotrophicus PAl 5 (NC_010123)</option>
<option value="GDI-PLASMID1">Gluconacetobacter diazotrophicus PAl 5 (NC_010124)</option>
<option value="GDI-CHROMOSOME">Gluconacetobacter diazotrophicus PAl 5 (NC_010125)</option>
<option value="GDA-CHROMOSOME">Gluconacetobacter diazotrophicus PAl 5 (NC_011365)</option>
<option value="GDA-PLASMID">Gluconacetobacter diazotrophicus PAl 5 (NC_011367)</option>
<option value="IHO-CHROM">Ignicoccus hospitalis KIN4/I (NC_009776)</option>
<option value="KPN-PLASMID1">Klebsiella pneumoniae (NC_011281)</option>
<option value="KPN-PLASMID2">Klebsiella pneumoniae (NC_011282)</option>
<option value="KPN-CHROMOSOME">Klebsiella pneumoniae (NC_011283)</option>
<option value="MPO-PLASMID2">Methylobacterium populi BJ001 (NC_010721)</option>
<option value="MPO-CHROMOSOME">Methylobacterium populi BJ001 (NC_010725)</option>
<option value="MPO-PLASMID1">Methylobacterium populi BJ001 (NC_010727)</option>
<option value="NEQ-CHROM">Nanoarchaeum equitans Kin4-M (NC_005213)</option>
<option value="populus">Populus trichocarpa</option>
<option value="PPU-CHROMOSOME">Pseudomonas putida W619 (NC_010501)</option>
<option value="PFU-CHROM">Pyrococcus furiosus DSM 3638 (NC_003413)</option>
<option value="RXY-CHROM">Rubrobacter xylanophilus DSM 9941 (NC_008148)</option>
<option value="yeast">S. cerevisiae chromosomes I and II</option>
<option selected="selected" value="SDE-CHROM">Saccharophagus degradans 2-40 (NC_007912)</option>
<option value="SPR-PLASMID">Serratia proteamaculans 568 (NC_009829)</option>
<option value="SPR-CHROMOSOME">Serratia proteamaculans 568 (NC_009832)</option>
<option value="SMA-CHROMOSOME">Stenotrophomonas maltophilia R551-3 (NC_011071)</option>
<option value="TTE-CHROM">Thermoanaerobacter tengcongensis MB4 (NC_003869)</option>
<option value="TFU-CHROM">Thermobifida fusca YX (NC_007333)</option>
<option value="TMA-CHROM">Thermotoga maritima MSB8 (NC_000853)</option>
<option value="ZM4-CHROM">Zymomonas mobilis ZM4 (ZM4_chrom)</option>
<option value="ZM4-PLASMID">Zymomonas mobilis ZM4 (ZM4_plasm)</option>
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<option value="500000">Show 500 kbp</option>
<option value="200000">Show 200 kbp</option>
<option value="100000">Show 100 kbp</option>
<option value="40000">Show 40 kbp</option>
<option value="20000">Show 20 kbp</option>
<option selected="selected" value="10001">Show 10 kbp</option>
<option value="10000">Show 10 kbp</option>
<option value="5000">Show 5 kbp</option>
<option value="2000">Show 2 kbp</option>
<option value="1000">Show 1 kbp</option>
<option value="200">Show 200 bp</option>
<option value="100">Show 100 bp</option>
<option value="50">Show 50 bp</option>
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<h1>Saccharophagus degradans 2-40 (NC_007912)</h1><form method="post" action="/cgi-bin/gbrowse/SDE-CHROM/#search" enctype="multipart/form-data" name="mainform">
<table class="searchtitle" border="0" cellspacing="0" width="100%"><tr><td align="left" colspan="2"></td></tr> <tr><th class="linkmenu" align="left" colspan="2"><a href="javascript:bookmarksite('GBrowse Saccharophagus degradans 2-40 (NC_007912)','http://cricket.ornl.gov/cgi-bin/gbrowse/SDE-CHROM/?start=500;stop=10500;ref=SDE-CHROM;width=640;version=100;flip=;cache=1;drag_and_drop=1;show_tooltips=1;grid=1;label=BeoCyc_TU')">[Bookmark this]</a> <a href="#upload">[Upload your own data]</a> <a href="?rand=c6be1;head=0">[Hide banner]</a> <a onmousedown="balloon.showTooltip(event,'url:?share_track=all')" href="#">[Share these tracks]</a> <a target="_blank" href="?help=link_image;flip=0;cache=0.490519079650891">[Link to Image]</a> <a target="_blank" href="?help=svg_image;flip=0;cache=0.40042451497084">[High-res Image]</a> <a target="help" href="?help=general">[Help]</a> <a class="reset_button" href="?reset=1">[Reset]</a></th></tr></table><a name="search"><div><div class="ctl_hidden" onclick="visibility('search_panel',1)" id="search_panel_show" style="display:none"><img src="/gbrowse/images/buttons/plus.png" alt="+" /> <span class="tctl"><b>Search</b></span></div><div class="ctl_visible" onclick="visibility('search_panel',0)" id="search_panel_hide" style="display:inline"><img src="/gbrowse/images/buttons/minus.png" alt="-" /> <span class="tctl"><b>Search</b></span></div> <div class="el_visible" id="search_panel" style="display:inline"><table class="searchtitle" border="0" cellspacing="0" width="100%"><tr class="searchbody"><td align="left" colspan="2"></td></tr> <tr class="searchbody"><td align="left"><b>Landmark or Region</b>:<br /><input type="text" name="name" value="SDE-CHROM:500..10500" size="25" /><input type="submit" name="Search" value="Search" /></td> <td align="left" colspan="1"><b>Reports & Analysis</b>:<br /><select name="plugin" >
<option value="GFFDumper">Download GFF File</option>
</select> <input type="submit" name="plugin_action" value="Configure..." /> <b><input type="submit" name="plugin_action" value="Go" /></b></td></tr> <tr class="searchbody" style="padding-top: 5px"><td align="left"><b>Data Source</b><br /><select name="source" onchange="document.mainform.submit()">
<option value="ACE-CHROM">Acidothermus cellulolyticus (NC_008578)</option>
<option value="ATHE-CHROM">Anaerocellum thermophilum (NC_012034)</option>
<option value="ATHE-PLASMID1">Anaerocellum thermophilum (NC_012036)</option>
<option value="ATHE-PLASMID2">Anaerocellum thermophilum (NC_012037)</option>
<option value="AZO-CHROM">Azoarcus sp. BH72 (NC_008702)</option>
<option value="SUB-CHROM">Bacillus subtilis 168 (NC_000964)</option>
<option value="BPH-CHROMOSOME2">Burkholderia phytofirmans PsJN (NC_010676)</option>
<option value="BPH-PLASMID">Burkholderia phytofirmans PsJN (NC_010679)</option>
<option value="BPH-CHROMOSOME1">Burkholderia phytofirmans PsJN (NC_010681)</option>
<option value="c_thermo">C. thermocellum ATCC 27405 (CP000568)</option>
<option value="CSA-CHROM">Caldicellulosiruptor saccharolyticus DSM 8903 (NC_009437)</option>
<option value="CAC-PLASMID">Clostridium acetobutylicum ATCC 824 (NC_001988)</option>
<option value="CAC-CHROM">Clostridium acetobutylicum ATCC 824 (NC_003030)</option>
<option value="CBE-CHROM">Clostridium beijerinckii NCIMB 8052 (NC_009617)</option>
<option value="CCE-CHROM">Clostridium cellulolyticum H10 (NC_011898)</option>
<option value="CPE-PLASMID">Clostridium perfringens 13 (NC_003042)</option>
<option value="CPE-CHROM">Clostridium perfringens 13 (NC_003366)</option>
<option value="CPH-CHROM">Clostridium phytofermentans ISDg (NC_010001)</option>
<option value="CTH-CHROM">Clostridium thermocellum ATCC 27405 (NC_009012)</option>
<option value="CHU-CHROM">Cytophaga hutchinsonii ATCC 33406 (NC_008255)</option>
<option value="ENT-PLASMID1">Enterobacter sp. 638 (NC_009425)</option>
<option value="ENT-CHROMOSOME">Enterobacter sp. 638 (NC_009436)</option>
<option value="FJO-CHROM">Flavobacterium johnsoniae UW101 (NC_009441)</option>
<option value="GDI-PLASMID2">Gluconacetobacter diazotrophicus PAl 5 (NC_010123)</option>
<option value="GDI-PLASMID1">Gluconacetobacter diazotrophicus PAl 5 (NC_010124)</option>
<option value="GDI-CHROMOSOME">Gluconacetobacter diazotrophicus PAl 5 (NC_010125)</option>
<option value="GDA-CHROMOSOME">Gluconacetobacter diazotrophicus PAl 5 (NC_011365)</option>
<option value="GDA-PLASMID">Gluconacetobacter diazotrophicus PAl 5 (NC_011367)</option>
<option value="IHO-CHROM">Ignicoccus hospitalis KIN4/I (NC_009776)</option>
<option value="KPN-PLASMID1">Klebsiella pneumoniae (NC_011281)</option>
<option value="KPN-PLASMID2">Klebsiella pneumoniae (NC_011282)</option>
<option value="KPN-CHROMOSOME">Klebsiella pneumoniae (NC_011283)</option>
<option value="MPO-PLASMID2">Methylobacterium populi BJ001 (NC_010721)</option>
<option value="MPO-CHROMOSOME">Methylobacterium populi BJ001 (NC_010725)</option>
<option value="MPO-PLASMID1">Methylobacterium populi BJ001 (NC_010727)</option>
<option value="NEQ-CHROM">Nanoarchaeum equitans Kin4-M (NC_005213)</option>
<option value="populus">Populus trichocarpa</option>
<option value="PPU-CHROMOSOME">Pseudomonas putida W619 (NC_010501)</option>
<option value="PFU-CHROM">Pyrococcus furiosus DSM 3638 (NC_003413)</option>
<option value="RXY-CHROM">Rubrobacter xylanophilus DSM 9941 (NC_008148)</option>
<option value="yeast">S. cerevisiae chromosomes I and II</option>
<option selected="selected" value="SDE-CHROM">Saccharophagus degradans 2-40 (NC_007912)</option>
<option value="SPR-PLASMID">Serratia proteamaculans 568 (NC_009829)</option>
<option value="SPR-CHROMOSOME">Serratia proteamaculans 568 (NC_009832)</option>
<option value="SMA-CHROMOSOME">Stenotrophomonas maltophilia R551-3 (NC_011071)</option>
<option value="TTE-CHROM">Thermoanaerobacter tengcongensis MB4 (NC_003869)</option>
<option value="TFU-CHROM">Thermobifida fusca YX (NC_007333)</option>
<option value="TMA-CHROM">Thermotoga maritima MSB8 (NC_000853)</option>
<option value="ZM4-CHROM">Zymomonas mobilis ZM4 (ZM4_chrom)</option>
<option value="ZM4-PLASMID">Zymomonas mobilis ZM4 (ZM4_plasm)</option>
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</div> <table class="searchbody" width="100%"><tr class="searchbody"><td align="right"><input type="submit" name="Configure tracks..." value="Configure tracks..." /> <b><input type="submit" name="Update Image" value="Update Image" /></b></td></tr></table></div></div><div><input type="hidden" name=".cgifields" value="ks" /><input type="hidden" name=".cgifields" value="width" /><input type="hidden" name=".cgifields" value="Operons_section_n" /><input type="hidden" name=".cgifields" value="General_section_n" /><input type="hidden" name=".cgifields" value="General_section_a" /><input type="hidden" name=".cgifields" value="grid" /><input type="hidden" name=".cgifields" value="flip" /><input type="hidden" name=".cgifields" value="show_tooltips" /><input type="hidden" name=".cgifields" value="drag_and_drop" /><input type="hidden" name=".cgifields" value="Operons_section_a" /><input type="hidden" name=".cgifields" value="sk" /><input type="hidden" name=".cgifields" value="label" /><input type="hidden" name=".cgifields" value="cache" /></div></form><p><i><font size="small">Note: This page uses cookies to save and restore preference information.
No information is shared.
</font></i> <br /> <tt><font size="small">Generic genome browser version E</font></tt></p>
</body>
</html>
------------------------------------------------------------------------------
OpenSolaris 2009.06 is a cutting edge operating system for enterprises
looking to deploy the next generation of Solaris that includes the latest
innovations from Sun and the OpenSource community. Download a copy and
enjoy capabilities such as Networking, Storage and Virtualization.
Go to: http://p.sf.net/sfu/opensolaris-get
_______________________________________________
Gmod-gbrowse mailing list
Gmod-gbrowse@...
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
I use 1.69.025 version. Javascript looks same to me for both pages. I have attached both page-source, if you can figure it out.
Thanks,
Mustafa.
--- On Fri, 6/5/09, Scott Cain <scott@...> wrote:
> From: Scott Cain <scott@...>
> Subject: Re: [Gmod-gbrowse] gbrowse_detail links lost on navigation
> To: "Syed Mustafa Hussain" <comp_sea@...>
> Cc: gmod-gbrowse@...
> Date: Friday, June 5, 2009, 11:53 PM
> Hi Mustafa,
>
> It sounds like a javascript problem. What version of
> GBrowse are you
> using? Have you tried looking at the html source of
> the page when it
> is working versus when it is not to see if there is a
> difference?
> Perhaps some javascript or css files are being cached by
> your browser
> that are causing problem. Perhaps if you clear out
> the cache it might
> help.
>
> Scott
>
>
> On Fri, Jun 5, 2009 at 1:05 PM, Syed Mustafa Hussain<comp_sea@...>
> wrote:
> >
> > Hi,
> >
> > I am having problem with gbrowse_detail links, they
> work fine on the first page, but as soon as I navigate to
> some other region of genome I loose these links. Upon
> clicking on a feature it just recenter the image instead of
> going to gbrowse_details page. I also loose the grid with
> link. Does someone knows how to fix it?
> >
> > Thanks,
> > Mustafa Syed.
> >
> >
> >
> >
> >
> ------------------------------------------------------------------------------
> > OpenSolaris 2009.06 is a cutting edge operating system
> for enterprises
> > looking to deploy the next generation of Solaris that
> includes the latest
> > innovations from Sun and the OpenSource community.
> Download a copy and
> > enjoy capabilities such as Networking, Storage and
> Virtualization.
> > Go to: http://p.sf.net/sfu/opensolaris-get
> > _______________________________________________
> > Gmod-gbrowse mailing list
> > Gmod-gbrowse@...
> > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
> >
>
>
>
> --
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.
>
> scott at scottcain dot net
> GMOD Coordinator (http://gmod.org/)
> 216-392-3087
> Ontario Institute for Cancer Research
>
<!DOCTYPE html
PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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<title>Saccharophagus degradans 2-40 (NC_007912): SDE-CHROM:3423537..3433537</title>
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var small_balloon = new Balloon;
BalloonConfig(small_balloon);
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<h1>Saccharophagus degradans 2-40 (NC_007912)</h1><form method="post" action="/cgi-bin/gbrowse/SDE-CHROM/#search" enctype="multipart/form-data" name="mainform">
<table class="searchtitle" border="0" cellspacing="0" width="100%"><tr><td align="left" colspan="2"></td></tr> <tr><th class="linkmenu" align="left" colspan="2"><a href="javascript:bookmarksite('GBrowse Saccharophagus degradans 2-40 (NC_007912)','http://cricket.ornl.gov/cgi-bin/gbrowse/SDE-CHROM/?start=3423537;stop=3433537;ref=SDE-CHROM;width=640;version=100;id=4a7158f8ab7e9206b6c8d9d700323422;label=BeoCyc_TU')">[Bookmark this]</a> <a href="#upload">[Upload your own data]</a> <a href="?rand=d8e41;head=0">[Hide banner]</a> <a onmousedown="balloon.showTooltip(event,'url:?share_track=all')" href="#">[Share these tracks]</a> <a target="_blank" href="?help=link_image;flip=0;cache=0.245076228437153">[Link to Image]</a> <a target="_blank" href="?help=svg_image;flip=0;cache=0.498944524982111">[High-res Image]</a> <a target="help" href="?help=general">[Help]</a> <a class="reset_button" href="?reset=1">[Reset]</a></th></tr></table><a name="search"><div><div class="ctl_hidden" onclick="visibility('search_panel',1)" id="search_panel_show" style="display:none"><img src="/gbrowse/images/buttons/plus.png" alt="+" /> <span class="tctl"><b>Search</b></span></div><div class="ctl_visible" onclick="visibility('search_panel',0)" id="search_panel_hide" style="display:inline"><img src="/gbrowse/images/buttons/minus.png" alt="-" /> <span class="tctl"><b>Search</b></span></div> <div class="el_visible" id="search_panel" style="display:inline"><table class="searchtitle" border="0" cellspacing="0" width="100%"><tr class="searchbody"><td align="left" colspan="2"></td></tr> <tr class="searchbody"><td align="left"><b>Landmark or Region</b>:<br /><input type="text" name="name" value="SDE-CHROM:3423537..3433537" size="25" /><input type="submit" name="Search" value="Search" /></td> <td align="left" colspan="1"><b>Reports & Analysis</b>:<br /><select name="plugin" >
<option selected="selected" value="GFFDumper">Download GFF File</option>
</select> <input type="submit" name="plugin_action" value="Configure..." /> <b><input type="submit" name="plugin_action" value="Go" /></b></td></tr> <tr class="searchbody" style="padding-top: 5px"><td align="left"><b>Data Source</b><br /><select name="source" onchange="document.mainform.submit()">
<option value="ACE-CHROM">Acidothermus cellulolyticus (NC_008578)</option>
<option value="ATHE-CHROM">Anaerocellum thermophilum (NC_012034)</option>
<option value="ATHE-PLASMID1">Anaerocellum thermophilum (NC_012036)</option>
<option value="ATHE-PLASMID2">Anaerocellum thermophilum (NC_012037)</option>
<option value="AZO-CHROM">Azoarcus sp. BH72 (NC_008702)</option>
<option value="SUB-CHROM">Bacillus subtilis 168 (NC_000964)</option>
<option value="BPH-CHROMOSOME2">Burkholderia phytofirmans PsJN (NC_010676)</option>
<option value="BPH-PLASMID">Burkholderia phytofirmans PsJN (NC_010679)</option>
<option value="BPH-CHROMOSOME1">Burkholderia phytofirmans PsJN (NC_010681)</option>
<option value="c_thermo">C. thermocellum ATCC 27405 (CP000568)</option>
<option value="CSA-CHROM">Caldicellulosiruptor saccharolyticus DSM 8903 (NC_009437)</option>
<option value="CAC-PLASMID">Clostridium acetobutylicum ATCC 824 (NC_001988)</option>
<option value="CAC-CHROM">Clostridium acetobutylicum ATCC 824 (NC_003030)</option>
<option value="CBE-CHROM">Clostridium beijerinckii NCIMB 8052 (NC_009617)</option>
<option value="CCE-CHROM">Clostridium cellulolyticum H10 (NC_011898)</option>
<option value="CPE-PLASMID">Clostridium perfringens 13 (NC_003042)</option>
<option value="CPE-CHROM">Clostridium perfringens 13 (NC_003366)</option>
<option value="CPH-CHROM">Clostridium phytofermentans ISDg (NC_010001)</option>
<option value="CTH-CHROM">Clostridium thermocellum ATCC 27405 (NC_009012)</option>
<option value="CHU-CHROM">Cytophaga hutchinsonii ATCC 33406 (NC_008255)</option>
<option value="ENT-PLASMID1">Enterobacter sp. 638 (NC_009425)</option>
<option value="ENT-CHROMOSOME">Enterobacter sp. 638 (NC_009436)</option>
<option value="FJO-CHROM">Flavobacterium johnsoniae UW101 (NC_009441)</option>
<option value="GDI-PLASMID2">Gluconacetobacter diazotrophicus PAl 5 (NC_010123)</option>
<option value="GDI-PLASMID1">Gluconacetobacter diazotrophicus PAl 5 (NC_010124)</option>
<option value="GDI-CHROMOSOME">Gluconacetobacter diazotrophicus PAl 5 (NC_010125)</option>
<option value="GDA-CHROMOSOME">Gluconacetobacter diazotrophicus PAl 5 (NC_011365)</option>
<option value="GDA-PLASMID">Gluconacetobacter diazotrophicus PAl 5 (NC_011367)</option>
<option value="IHO-CHROM">Ignicoccus hospitalis KIN4/I (NC_009776)</option>
<option value="KPN-PLASMID1">Klebsiella pneumoniae (NC_011281)</option>
<option value="KPN-PLASMID2">Klebsiella pneumoniae (NC_011282)</option>
<option value="KPN-CHROMOSOME">Klebsiella pneumoniae (NC_011283)</option>
<option value="MPO-PLASMID2">Methylobacterium populi BJ001 (NC_010721)</option>
<option value="MPO-CHROMOSOME">Methylobacterium populi BJ001 (NC_010725)</option>
<option value="MPO-PLASMID1">Methylobacterium populi BJ001 (NC_010727)</option>
<option value="NEQ-CHROM">Nanoarchaeum equitans Kin4-M (NC_005213)</option>
<option value="populus">Populus trichocarpa</option>
<option value="PPU-CHROMOSOME">Pseudomonas putida W619 (NC_010501)</option>
<option value="PFU-CHROM">Pyrococcus furiosus DSM 3638 (NC_003413)</option>
<option value="RXY-CHROM">Rubrobacter xylanophilus DSM 9941 (NC_008148)</option>
<option value="yeast">S. cerevisiae chromosomes I and II</option>
<option selected="selected" value="SDE-CHROM">Saccharophagus degradans 2-40 (NC_007912)</option>
<option value="SPR-PLASMID">Serratia proteamaculans 568 (NC_009829)</option>
<option value="SPR-CHROMOSOME">Serratia proteamaculans 568 (NC_009832)</option>
<option value="SMA-CHROMOSOME">Stenotrophomonas maltophilia R551-3 (NC_011071)</option>
<option value="TTE-CHROM">Thermoanaerobacter tengcongensis MB4 (NC_003869)</option>
<option value="TFU-CHROM">Thermobifida fusca YX (NC_007333)</option>
<option value="TMA-CHROM">Thermotoga maritima MSB8 (NC_000853)</option>
<option value="ZM4-CHROM">Zymomonas mobilis ZM4 (ZM4_chrom)</option>
<option value="ZM4-PLASMID">Zymomonas mobilis ZM4 (ZM4_plasm)</option>
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<h1>Saccharophagus degradans 2-40 (NC_007912)</h1><form method="post" action="/cgi-bin/gbrowse/SDE-CHROM/#search" enctype="multipart/form-data" name="mainform">
<table class="searchtitle" border="0" cellspacing="0" width="100%"><tr><td align="left" colspan="2"></td></tr> <tr><th class="linkmenu" align="left" colspan="2"><a href="javascript:bookmarksite('GBrowse Saccharophagus degradans 2-40 (NC_007912)','http://cricket.ornl.gov/cgi-bin/gbrowse/SDE-CHROM/?start=500;stop=10500;ref=SDE-CHROM;width=640;version=100;flip=;cache=1;drag_and_drop=1;show_tooltips=1;grid=1;label=BeoCyc_TU')">[Bookmark this]</a> <a href="#upload">[Upload your own data]</a> <a href="?rand=c6be1;head=0">[Hide banner]</a> <a onmousedown="balloon.showTooltip(event,'url:?share_track=all')" href="#">[Share these tracks]</a> <a target="_blank" href="?help=link_image;flip=0;cache=0.490519079650891">[Link to Image]</a> <a target="_blank" href="?help=svg_image;flip=0;cache=0.40042451497084">[High-res Image]</a> <a target="help" href="?help=general">[Help]</a> <a class="reset_button" href="?reset=1">[Reset]</a></th></tr></table><a name="search"><div><div class="ctl_hidden" onclick="visibility('search_panel',1)" id="search_panel_show" style="display:none"><img src="/gbrowse/images/buttons/plus.png" alt="+" /> <span class="tctl"><b>Search</b></span></div><div class="ctl_visible" onclick="visibility('search_panel',0)" id="search_panel_hide" style="display:inline"><img src="/gbrowse/images/buttons/minus.png" alt="-" /> <span class="tctl"><b>Search</b></span></div> <div class="el_visible" id="search_panel" style="display:inline"><table class="searchtitle" border="0" cellspacing="0" width="100%"><tr class="searchbody"><td align="left" colspan="2"></td></tr> <tr class="searchbody"><td align="left"><b>Landmark or Region</b>:<br /><input type="text" name="name" value="SDE-CHROM:500..10500" size="25" /><input type="submit" name="Search" value="Search" /></td> <td align="left" colspan="1"><b>Reports & Analysis</b>:<br /><select name="plugin" >
<option value="GFFDumper">Download GFF File</option>
</select> <input type="submit" name="plugin_action" value="Configure..." /> <b><input type="submit" name="plugin_action" value="Go" /></b></td></tr> <tr class="searchbody" style="padding-top: 5px"><td align="left"><b>Data Source</b><br /><select name="source" onchange="document.mainform.submit()">
<option value="ACE-CHROM">Acidothermus cellulolyticus (NC_008578)</option>
<option value="ATHE-CHROM">Anaerocellum thermophilum (NC_012034)</option>
<option value="ATHE-PLASMID1">Anaerocellum thermophilum (NC_012036)</option>
<option value="ATHE-PLASMID2">Anaerocellum thermophilum (NC_012037)</option>
<option value="AZO-CHROM">Azoarcus sp. BH72 (NC_008702)</option>
<option value="SUB-CHROM">Bacillus subtilis 168 (NC_000964)</option>
<option value="BPH-CHROMOSOME2">Burkholderia phytofirmans PsJN (NC_010676)</option>
<option value="BPH-PLASMID">Burkholderia phytofirmans PsJN (NC_010679)</option>
<option value="BPH-CHROMOSOME1">Burkholderia phytofirmans PsJN (NC_010681)</option>
<option value="c_thermo">C. thermocellum ATCC 27405 (CP000568)</option>
<option value="CSA-CHROM">Caldicellulosiruptor saccharolyticus DSM 8903 (NC_009437)</option>
<option value="CAC-PLASMID">Clostridium acetobutylicum ATCC 824 (NC_001988)</option>
<option value="CAC-CHROM">Clostridium acetobutylicum ATCC 824 (NC_003030)</option>
<option value="CBE-CHROM">Clostridium beijerinckii NCIMB 8052 (NC_009617)</option>
<option value="CCE-CHROM">Clostridium cellulolyticum H10 (NC_011898)</option>
<option value="CPE-PLASMID">Clostridium perfringens 13 (NC_003042)</option>
<option value="CPE-CHROM">Clostridium perfringens 13 (NC_003366)</option>
<option value="CPH-CHROM">Clostridium phytofermentans ISDg (NC_010001)</option>
<option value="CTH-CHROM">Clostridium thermocellum ATCC 27405 (NC_009012)</option>
<option value="CHU-CHROM">Cytophaga hutchinsonii ATCC 33406 (NC_008255)</option>
<option value="ENT-PLASMID1">Enterobacter sp. 638 (NC_009425)</option>
<option value="ENT-CHROMOSOME">Enterobacter sp. 638 (NC_009436)</option>
<option value="FJO-CHROM">Flavobacterium johnsoniae UW101 (NC_009441)</option>
<option value="GDI-PLASMID2">Gluconacetobacter diazotrophicus PAl 5 (NC_010123)</option>
<option value="GDI-PLASMID1">Gluconacetobacter diazotrophicus PAl 5 (NC_010124)</option>
<option value="GDI-CHROMOSOME">Gluconacetobacter diazotrophicus PAl 5 (NC_010125)</option>
<option value="GDA-CHROMOSOME">Gluconacetobacter diazotrophicus PAl 5 (NC_011365)</option>
<option value="GDA-PLASMID">Gluconacetobacter diazotrophicus PAl 5 (NC_011367)</option>
<option value="IHO-CHROM">Ignicoccus hospitalis KIN4/I (NC_009776)</option>
<option value="KPN-PLASMID1">Klebsiella pneumoniae (NC_011281)</option>
<option value="KPN-PLASMID2">Klebsiella pneumoniae (NC_011282)</option>
<option value="KPN-CHROMOSOME">Klebsiella pneumoniae (NC_011283)</option>
<option value="MPO-PLASMID2">Methylobacterium populi BJ001 (NC_010721)</option>
<option value="MPO-CHROMOSOME">Methylobacterium populi BJ001 (NC_010725)</option>
<option value="MPO-PLASMID1">Methylobacterium populi BJ001 (NC_010727)</option>
<option value="NEQ-CHROM">Nanoarchaeum equitans Kin4-M (NC_005213)</option>
<option value="populus">Populus trichocarpa</option>
<option value="PPU-CHROMOSOME">Pseudomonas putida W619 (NC_010501)</option>
<option value="PFU-CHROM">Pyrococcus furiosus DSM 3638 (NC_003413)</option>
<option value="RXY-CHROM">Rubrobacter xylanophilus DSM 9941 (NC_008148)</option>
<option value="yeast">S. cerevisiae chromosomes I and II</option>
<option selected="selected" value="SDE-CHROM">Saccharophagus degradans 2-40 (NC_007912)</option>
<option value="SPR-PLASMID">Serratia proteamaculans 568 (NC_009829)</option>
<option value="SPR-CHROMOSOME">Serratia proteamaculans 568 (NC_009832)</option>
<option value="SMA-CHROMOSOME">Stenotrophomonas maltophilia R551-3 (NC_011071)</option>
<option value="TTE-CHROM">Thermoanaerobacter tengcongensis MB4 (NC_003869)</option>
<option value="TFU-CHROM">Thermobifida fusca YX (NC_007333)</option>
<option value="TMA-CHROM">Thermotoga maritima MSB8 (NC_000853)</option>
<option value="ZM4-CHROM">Zymomonas mobilis ZM4 (ZM4_chrom)</option>
<option value="ZM4-PLASMID">Zymomonas mobilis ZM4 (ZM4_plasm)</option>
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<area shape="rect" coords="443,54,508,91" target="_blank" href="../../gbrowse_details/SDE-CHROM?name=TU58V-18348;class=Sequence;ref=SDE-CHROM;start=7034;end=7507;feature_id=12102" title="BeoCyc: TU58V-18348 SDE-CHROM:7034..7507" />
<area shape="rect" coords="644,40,666,51" target="_blank" href="../../gbrowse_details/SDE-CHROM?name=Sde_0009;class=Sequence;ref=SDE-CHROM;start=10175;end=10690;feature_id=6432" title="BeoCyc: Sde_0009 SDE-CHROM:10175..10690" />
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