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Re: mosflm 7.0.5-2 fink error

by Alexander Hansen-2 :: Rate this Message:

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On 5/28/12 12:20 PM, Kyle Morris wrote:

> Dear all,
>
> I am trying to install mosflm 7.0.5-2 over fink but run into an error. I really would like access to the old mosflm GUI and so any help in getting it working would be of great help.
>
> Attached is what I hope to be the appropriate amount of information on the error.
>
> Many thanks,
> Kyle
>
> cd mosflm ; make
> gfortran -c -O0 -w control.f
> gfortran -c -O3         mosflm_all_ip_inc.f
> gfortran -c -O0 -w unoptimizable.f
> gcc   -c pck.c
> gcc   -c ctimer.c
> gcc   -c chelp.c
> gcc   -c -o open_socket.o open_socket.c
> gcc   -c -o close_socket.o close_socket.c
> gcc   -c -o read_socket.o read_socket.c
> gcc   -c -o write_socket.o write_socket.c
> gcc   -c -I../jpg mosflm_jpeg.c
> gcc   -c -o matzerr.o matzerr.c
> gcc   -c -o hklmanage.o hklmanage.c
> gfortran -c -O0 -w torefix.f
> gcc   -c -o bravais_fortran.o bravais_fortran.c
> gcc   -c cbfwrap.c
> gcc   -c pilatus_c.c
> gfortran  control.o mosflm_all_ip_inc.o unoptimizable.o pck.o ctimer.o chelp.o open_socket.o close_socket.o read_socket.o write_socket.o mosflm_jpeg.o matzerr.o hklmanage.o torefix.o bravais_fortran.o cbfwrap.o pilatus_c.o /sw/src/fink.build/mosflm-7.0.5-2/mosflm705/lib/DPSLIB.a ../cbf/lib/libcbf.a ../jpg/libjpeg.a  \
>                 -L/sw/lib -L/sw/share/xtal/ccp4-6.2.0/lib -lccp4f -lccp4c -lxdl_view -L/usr/X11R6/lib -lXt -lSM -lICE -lX11 -lcurses -o ../bin/ipmosflm
> Undefined symbols:
>   "__gfortran_transfer_integer_write", referenced from:
>       _ccpopn_ in libccp4f.a(ccpopn.o)
>       _ccpopn_ in libccp4f.a(ccpopn.o)
>       _ccpopn_ in libccp4f.a(ccpopn.o)
>       _ccpopn_ in libccp4f.a(ccpopn.o)
>   "__gfortran_transfer_character_write", referenced from:
>       _ccpopn_ in libccp4f.a(ccpopn.o)
>       _ccpopn_ in libccp4f.a(ccpopn.o)
>       _ccpopn_ in libccp4f.a(ccpopn.o)
>       _ccpopn_ in libccp4f.a(ccpopn.o)
>       _ccpopn_ in libccp4f.a(ccpopn.o)
>       _ccpopn_ in libccp4f.a(ccpopn.o)
>       _ccpopn_ in libccp4f.a(ccpopn.o)
>       _ccpopn_ in libccp4f.a(ccpopn.o)
>       _ccpopn_ in libccp4f.a(ccpopn.o)
>       _putlin_ in libccp4f.a(putlin.o)
>       _putlin_ in libccp4f.a(putlin.o)
>       _dna_list_start_ in libccp4f.a(dna_list_start.o)
>       _dna_character_item_ in libccp4f.a(dna_character_item.o)
>       _dna_character_item_ in libccp4f.a(dna_character_item.o)
>       _dna_table_start_ in libccp4f.a(dna_table_start.o)
>       _dna_table_start_ in libccp4f.a(dna_table_start.o)
>       _dna_table_start_ in libccp4f.a(dna_table_start.o)
>       _ugerr_ in libccp4f.a(ugerr.o)
>       _ugerr_ in libccp4f.a(ugerr.o)
> ld: symbol(s) not found
> collect2: ld returned 1 exit status
> make[1]: *** [ipmosflm] Error 1
> make: *** [all] Error 2
> ### execution of /tmp/fink.lVH2Y failed, exit code 2
> Removing runtime build-lock...
> Removing build-lock package...
> /sw/bin/dpkg-lockwait -r fink-buildlock-mosflm-7.0.5-2
> (Reading database ... 86900 files and directories currently installed.)
> Removing fink-buildlock-mosflm-7.0.5-2 ...
> Failed: phase compiling: mosflm-7.0.5-2 failed
>
> Package manager version: 0.32.6
> Distribution version: selfupdate-rsync Mon May 28 19:56:02 2012, 10.6, i386
> Trees: local/main stable/main
> Xcode: 3.2.6
> Max. Fink build jobs:  1
>
>

What do you get from "which gfortran" ?

--
Alexander Hansen, Ph.D.
Fink User Liaison
http://finkakh.wordpress.com/2012/02/21/got-job/

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