Re: name searching in gbrowse_syn

Hi Sheldon,

Recently we updated the CVS and reinstalled GBrowse and now it seems like our VISTA plot is no longer working.

The version we have of gbrowse is this one:
# $Id: gbrowse.PLS,v 1.119.4.57.2.59.2.128 2009/05/11 13:41:38 scottcain Exp $

and the error we are now getting when we try to load the vista plot is this: (this is happening in the error_log. not on the actual gbrowse display page. on that page, no error is displayed, the track just simply does not show)
>[Tue Jun 02 14:25:40 2009] [error] [client 10.10.50.22] Use of uninitialized value $nr_tracks_added in numeric eq (==) at /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser.pm line 1397.
>[Tue Jun 02 14:25:40 2009] [error] [client 10.10.50.22] Use of uninitialized value $nr_tracks_added in subtraction (-) at /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser.pm line 1404.

Is there something specific we need to do?
I know when we were on this version the vista plot was still working :
# $Id: gbrowse.PLS,v 1.119.4.57.2.59.2.121 2009/02/20 19:14:48 scottcain Exp $

Any help would be great.

Thanks,
Cynthia

------------------------------------------------------------------------------
OpenSolaris 2009.06 is a cutting edge operating system for enterprises
looking to deploy the next generation of Solaris that includes the latest
innovations from Sun and the OpenSource community. Download a copy and
enjoy capabilities such as Networking, Storage and Virtualization.
Go to: http://p.sf.net/sfu/opensolaris-get
_______________________________________________
Gmod-gbrowse mailing list
Gmod-gbrowse@...
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse