Revision: 22230
http://gmod.svn.sourceforge.net/gmod/?rev=22230&view=revAuthor: scottcain
Date: 2009-11-04 20:51:55 +0000 (Wed, 04 Nov 2009)
Log Message:
-----------
adding documentation about grouping by ID
Modified Paths:
--------------
schema/trunk/chado/load/bin/bulk_load_gff3.PLS
Modified: schema/trunk/chado/load/bin/bulk_load_gff3.PLS
===================================================================
--- schema/trunk/chado/load/bin/bulk_load_gff3.PLS 2009-11-04 16:48:57 UTC (rev 22229)
+++ schema/trunk/chado/load/bin/bulk_load_gff3.PLS 2009-11-04 20:51:55 UTC (rev 22230)
@@ -220,9 +220,6 @@
otherwise, it is assigned a uniquename that is equal to
'auto' concatenated with the feature_id.
-(Note that this is a potential problem as there is no check
-to make sure that it is appropriately unique.)
-
=item If there is a Name tag, it's value is set to feature.name;
otherwise it is null.
@@ -526,6 +523,14 @@
match:Maize_cDNA=maize_cdna_blast, \
mRNA=genscan_prediction,exon=genscan_prediction
+=item Grouping features by ID
+
+The GFF3 specification allows features like CDSes and match_parts to
+be grouped together by sharing the same ID. This loader does not support
+this method of grouping. Instead the parent feature must be explicitly
+created before the parts and the parts must refer to the parent with the
+Parent tag.
+
=back
=head1 AUTHORS
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