SQLite for BioPerl indexing

[Mark A. Jensen]

Hi All,

My AnyDBM_File hack to allow ActiveState a workaround
for DB_File (see http://lists.open-bio.org/pipermail/bioperl-l/2009-September/031309.html)
turned into a "BioPerl Autumn of Code" project.
Bio::DB::SQLite_File is a nearly complete emulation of DB_File,
down to the access functions (get(), put(), del(), seq()) and
user-provided comparision functions.

If you're interested, please see
http://www.bioperl.org/wiki/HOWTO:SQLite_for_BioPerl_indexing
for exhausting discussion and download. I would REALLY
appreciate a core dev/power user or two checking out the
anydbm-branch branch and performing a straight build sequence,
and letting me know how it goes. See the wiki for those paths.

Thanks--
MAJ

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[Chris Fields-5]

I'll check it out, but it prob. won't be until Monday.

chris

On Oct 9, 2009, at 6:28 PM, Mark A. Jensen wrote:

> Hi All,
>
> My AnyDBM_File hack to allow ActiveState a workaround
> for DB_File (see http://lists.open-bio.org/pipermail/bioperl-l/2009-September/031309.html 
> )
> turned into a "BioPerl Autumn of Code" project.
> Bio::DB::SQLite_File is a nearly complete emulation of DB_File,
> down to the access functions (get(), put(), del(), seq()) and
> user-provided comparision functions.
>
> If you're interested, please see
> http://www.bioperl.org/wiki/HOWTO:SQLite_for_BioPerl_indexing
> for exhausting discussion and download. I would REALLY
> appreciate a core dev/power user or two checking out the
> anydbm-branch branch and performing a straight build sequence,
> and letting me know how it goes. See the wiki for those paths.
>
> Thanks--
> MAJ
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l@...
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

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