Hello,
While running blastpgp on a newly downloaded UniProt database we get the following error:
$ /usr/users/gcg/linuxbin/gcgbin/pub/gcg_blastpgp -i pdb1a9x.seq -d /blastdb/Proteins.new/uniprot -o test.out
[gcg_blastpgp] WARNING: Could not find index files for database /blastdb/Proteins.new/trembl.101
[gcg_blastpgp] WARNING: Could not find index files for database /blastdb/Proteins.new/trembl.102
...
[gcg_blastpgp] WARNING: [000.000] Could not find index files for database /blastdb/Proteins.new/trembl.101
[gcg_blastpgp] WARNING: [000.000] Could not find index files for database /blastdb/Proteins.new/trembl.102
...
[gcg_blastpgp] ERROR: ncbiapi [000.000] SeqPortNew: lcl|20956 stop(379) >= len(117)
[gcg_blastpgp] ERROR: ncbiapi [000.000] SeqPortNew: lcl|20956 stop(120) >= len(117)
...
Running the same comand with swissprot works ok:
$ /usr/users/gcg/linuxbin/gcgbin/pub/gcg_blastpgp -i pdb1a9x.seq -d /blastdb/Proteins.new/swissprot -o test.out
How can this problem be resolved?
Thanks.
