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error to reinstall GBrowse v2

by Biliards :: Rate this Message:

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Hi all,

After good installation in server test, where apache gbrowse
configuration works and modperl and/or modfcgi works with demo
databases, I reinstall gbrowse v2 in our site server: I used new
server, I install all and my principal pipeline was:

* install prerequisites about
http://gmod.org/wiki/GBrowse_2.0_Prerequisites without Bio/Graphics
package
* export CVSROOT=:pserver:anonymous@...:/cvsroot/gmod
* cvs co Generic-Genome-Browser
* cvs update -d
* iter that start with 'perl Build.PL'

after restart apache, I have got bottom errors log when I run
http://gbrowse.cribi.unipd.it/public/gbrowse/vitis_vinifera_8x/
I attached my apache gbrowse configuration file.

Invalid source  at
/usr/local/lib/perl/5.10.0/Bio/Graphics/Browser/Render.pm line 54
Status: 302 Found
Location: /vitis_vinifera_8x/

Set-Cookie: gbrowse_sess=9065e1cd04f56f8e3a41d7437a20e682; path=/;
expires=Fri, 03-Jul-2009 13:26:13 GMT
Date: Wed, 03 Jun 2009 13:26:13 GMT
Cache-control: no-cache
Content-Type: text/html; charset=ISO-8859-1

..html gbrowse page content...

[Wed Jun 03 15:26:13 2009] [warn] (104)Connection reset by peer:
mod_fcgid: read data from fastcgi server error.
[Wed Jun 03 15:26:13 2009] [error] [client 192.168.20.79] Premature
end of script headers: gbrowse, referer:
http://gbrowse.cribi.unipd.it/
[Wed Jun 03 15:26:19 2009] [notice] mod_fcgid: process
/usr/lib/cgi-bin/public/gbrowse(29584) exit(communication error),
terminated by calling exit(), return code: 0

When I run http://gbrowse.cribi.unipd.it/mpublic/gbrowse/vitis_vinifera_8x/
I obtain other apache errors:

[Wed Jun 03 15:41:26 2009] [error] [client 192.168.20.79] failed to
resolve handler `ModPerl::Registry': Can't locate loadable object for
module Apache2::ServerUtil in @INC (@INC contains: /etc/perl
/usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5
/usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10
/usr/local/lib/site_perl . /etc/apache2) at
/usr/lib/perl5/Apache2/XSLoader.pm line 31\nCompilation failed in
require at /usr/lib/perl5/ModPerl/RegistryCooker.pm line 30.\nBEGIN
failed--compilation aborted at
/usr/lib/perl5/ModPerl/RegistryCooker.pm line 30.\nCompilation failed
in require at (eval 3) line 3.\n\t...propagated at
/usr/share/perl/5.10/base.pm line 92.\nBEGIN failed--compilation
aborted at /usr/lib/perl5/ModPerl/Registry.pm line 26.\nCompilation
failed in require at (eval 2) line 3.\n

Instead, when I run
http://gbrowse.cribi.unipd.it/fpublic/gbrowse/vitis_vinifera_8x/ I
have got this apache error log:

[Wed Jun 03 15:43:11 2009] [error] [client 192.168.20.79] File does
not exist: /usr/lib/cgi-bin/public/gbrowse/vitis_vinifera_8x/

Have you got any ideas about this errors log?
Best,
Alessandra.


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