BLASTP 1.4.7 [6-Oct-94] [Build 12:00:56 Oct 13 1994] Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol. Biol. 215:403-10. Query= P1;YEEC_ECOLI Length: 347 (347 letters) Database: SwissProt version 30 Sat Oct 15 12:04:49 MET 1994 40,292 sequences; 14,147,368 total letters. Searching..................................................done Histogram of Expectations Observed Numbers of Database Sequences Satisfying Various EXPECTation Thresholds (E parameter values) Histogram units: = 20 Sequences : less than 20 sequences EXPECTation Threshold (E parameter) | V Observed Counts--> 10000 4492 1088 |====================================================== 6310 3404 1186 |=========================================================== 3980 2218 569 |============================ 2510 1649 678 |================================= 1580 971 294 |============== 1000 677 241 |============ 631 436 145 |======= 398 291 118 |===== 251 173 56 |== 158 117 34 |= 100 83 23 |= 63.1 60 13 |: 39.8 47 15 |: 25.1 32 8 |: 15.8 24 6 |: >>>>>>>>>>>>>>>>>>>>> Expect = 10.0, Observed = 18 <<<<<<<<<<<<<<<<< 10.0 18 5 |: 6.31 13 1 |: 3.98 12 2 |: 2.51 10 0 | 1.58 10 1 |: C. On-line Summaries Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N ............................................................................... sp|P08506|DACC_ECOLI PENICILLIN-BINDING PROTEIN 6 PRECURS... 894 5.0e-120 1 sp|P38422|DACF_BACSU PENICILLIN-BINDING DACF PROTEIN PREC... 209 5.0e-47 3 ............................................................................... sp|P28271|IREB_MOUSE IRON-RESPONSIVE ELEMENT BINDING PROT... 59 0.9996 1 sp|P31571|CAIA_ECOLI PROBABLE CARNITINE OPERON OXIDOREDUC... 48 0.9998 2 D. Alignments .............................................................................. >sp|P08506|DACC_ECOLI PENICILLIN-BINDING PROTEIN 6 PRECURSOR (D-ALANYL-D-ALANINE CARBOXYPEPTIDASE FRACTION C) (EC 3.4.16.4) (DD-PEPTIDASE) (DD-CARBOXYPEPTIDASE) (PBP-6). Length = 400 Score = 894 (409.5 bits), Expect = 5.0e-120, P = 5.0e-120 Identities = 169/342 (49%), Positives = 237/3 42 (69%) Query: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60 MDY +G++L GN ++ +PASLTK+MT YVV +A+ + +I D+VTVG+DAWA NP Sbjct: 45 MDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPA 104 Query: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120 GSS+MFLK GD+VSV DL++G+I+ SGNDAC+ALADY+AG Q F+ +MN YA+KL L Sbjct: 105 LRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGL 164 Query: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180 +T F+TVHGLDAPGQ S+A D+A+L +A+IH PE Y ++ EK T+N I Q NRN LL Sbjct: 165 TNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLL 224 Query: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240 W +N DG+KTG T+GAG+NL+ASA G RLI+VV+GA + + R E+ KLL WG + Sbjct: 225 WSSNLNEDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRF 284 Query: 241 FTTVQILHRGKKVGTERIWYGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAP 300 F TV + T+R+W+GDK ++LG + + +P+ ++ ++KA YTL +LTAP Sbjct: 285 FETVTPIKPDATFVTQRVWFGDKSEVNLGAGEAGSVTIPRGQLKNLKASYTLTEPQLTAP 344 Query: 301 ISAHQRVGEIELYDRDKQVAHWPLVTLESVGEGSMFSRLSDY 342 + Q VG I+ K + PL+ +E+V EG F R+ D+ Sbjct: 345 LKKGQVVGTIDFQLNGKSIEQRPLIVMENVEEGGFFGRVWDF 386 >sp|P38422|DACF_BACSU PENICILLIN-BINDING DACF PROTEIN PRECURSOR (D-ALANYL-D-ALANINE CARBOXYPEPTIDASE) (EC 3.4.16.4) (DD-PEPTIDASE) (DD-CARBOXYPEPTIDASE). Length = 389 Score = 209 (95.7 bits), Expect = 5.0e-47, Sum P(3) = 5.0e-47 Identities = 37/93 (39%), Positives = 68/93 (73%) Query: 62 VGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLK 121 +G S +FL+ G+ ++V+++ +G+ + SGNDA VA+A++I+G + +FV+ MN A++L LK Sbjct: 98 MGGSQIFLEPGEEMTVKEMLKGIAIASGNDASVAMAEFISGSEEEFVKKMNKKAKELGLK 157 Query: 122 DTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGE 154 +T F+ GL G +SSAYD+A++++ ++ E Sbjct: 158 NTSFKNPTGLTEEGHYSSAYDMAIMAKELLKYE 190 Score = 161 (73.8 bits), Expect = 5.0e-47, Sum P(3) = 5.0e-47 Identities = 45/153 (29%), Positives = 73/153 (47%) Query: 187 VDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQI 246 VDG+KTG+T A + L ASA G R IAVV GA + K R + K+L + + T + Sbjct: 226 VDGVKTGYTGEAKYCLTASAKKGNMRAIAVVFGASTPKERNAQVTKMLDFAFSQYETHPL 285 Query: 247 LHRGKKVGTERIWYGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQR 306 R + V ++ G ++ I+L T + ++ K E + K ++API Q Sbjct: 286 YKRNQTVAKVKVKKGKQKFIELTTSEPISILTKKGEDMNDVKKEIKMKDNISAPIQKGQE 345 Query: 307 VGEIELYDRDKQVAHWPLVTLESVGEGSMFSRL 339 +G + L + +A P+ E + + S L Sbjct: 346 LGTLVLKKDGEVLAESPVAAKEDMKKAGFISFL 378 Score = 77 (35.3 bits), Expect = 5.0e-47, Sum P(3) = 5.0e-47 Identities = 17/49 (34%), Positives = 28/49 (57%) Query: 5 TGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA 53 TG++L N +++ PAS+TK+MT ++ A+D +I D V A Sbjct: 47 TGKVLYNKNSNERLAPASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHA 95 .............................................................. >sp|P28271|IREB_MOUSE IRON-RESPONSIVE ELEMENT BINDING PROTEIN (IRE-BP) (FERRITIN REPRESSOR PROTEIN) (ACONITATE HYDRATASE) (EC 4.2.1.3) (CITRATE HYDRO-LYASE) (ACONITASE). Length = 889 Score = 59 (27.0 bits), Expect = 7.9, P = 1.0 Identities = 14/47 (29%), Positives = 23/47 (48%) Query: 207 VDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKV 253 VD RR ++ D R +E + L+WG Q F ++I+ G + Sbjct: 130 VDFNRRADSLQKNQDLEFERNKERFEFLKWGSQAFCNMRIIPPGSGI 176 >sp|P31571|CAIA_ECOLI PROBABLE CARNITINE OPERON OXIDOREDUCTASE CAIA (EC 1.3.99.-). Length = 380 Score = 48 (22.0 bits), Expect = 8.7, Sum P(2) = 1.0 Identities = 11/31 (35%), Positives = 17/31 (54%) Query: 46 IVTVGRDAWAKDNPVFVGSSLMFLKEGDRVS 76 IV + RD + D PV+ G + K G +V+ Sbjct: 165 IVVMARDGASPDKPVYTGWFVDMSKPGIKVT 195 Score = 43 (19.7 bits), Expect = 8.7, Sum P(2) = 1.0 Identities = 11/35 (31%), Positives = 17/35 (48%) Query: 197 GAGFNLIASAVDGQRRLIAVVMGADSAKGREEEAR 231 G GFN + D +R L+A+ + E+ AR Sbjct: 227 GNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAAR 261 Parameters: H=1 V=500 B=250 -ctxfactor=1.00 E=10 Query ----- As Used ----- ----- Computed ---- Frame MatID Matrix name Lambda K H Lambda K H +0 0 BLOSUM62 0.318 0.135 0.399 same same same Query Frame MatID Length Eff.Length E S W T X E2 S2 +0 0 347 347 10. 59 3 11 22 0.21 34 Statistics: Query Expected Observed HSPs HSPs Frame MatID High Score High Score Reportable Reported +0 0 63 (28.9 bits) 1826 (836.5 bits) 42 42 Query Neighborhd Word Excluded Failed Successful Overlaps Frame MatID Words Hits Hits Extensions Extensions Excluded +0 0 9047 10061369 2135661 7914281 11427 5 Database: SwissProt version 30 Sat Oct 15 12:04:49 MET 1994 Release date: unknown Posted date: 12:08 PM MET Oct 15, 1994 # of letters in database: 14,147,368 # of sequences in database: 40,292 # of database sequences satisfying E: 18 No. of states in DFA: 573 (56 KB) Total size of DFA: 149 KB (192 KB) Time to generate neighborhood: 0.10u 0.01s 0.11t Real: 00:00:00 Time to search database: 113.33u 3.65s 116.98t Real: 00:03:11 Total cpu time: 113.51u 3.80s 117.31t Real: 00:03:12