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gap4 does not run

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	gap4 does not run by Damien-12 :: Rate this Message: Reply to Author \| View Threaded \| Show Only this Message I downloaded the Staden package and tried to use it. Unfortunately, the program gap4 refuses to start (while othe programs like trev of pregap4 run fine). When I try to start gap4, I get the following message: invalid command name "load_alignment_matrix" while executing "load_alignment_matrix [keylget gap_defs ALIGNMENT.MATRIX_FILE]" (file "/home/damien/BIN/staden-linux-1-6-0/lib/gap/gap.tcl" line 683) I would appreciate if someone could tell me what to do. My OS is Kubuntu Linux (Debian based). Damien _______________________________________________ Staden mailing list Staden@... http://www.bio.net/biomail/listinfo/staden
	Re: gap4 does not run by Paul Donohue-4 :: Rate this Message: Reply to Author \| View Threaded \| Show Only this Message http://www.bio.net/bionet/mm/staden/2006-January/001358.html On Wed, Apr 26, 2006 at 12:10:29AM +0000, Damien wrote: > > I downloaded the Staden package and tried to use it. Unfortunately, the > program gap4 refuses to start (while othe programs like trev of pregap4 > run fine). > > When I try to start gap4, I get the following message: > > invalid command name "load_alignment_matrix" > while executing > "load_alignment_matrix [keylget gap_defs ALIGNMENT.MATRIX_FILE]" > (file "/home/damien/BIN/staden-linux-1-6-0/lib/gap/gap.tcl" line 683) > > I would appreciate if someone could tell me what to do. My OS is Kubuntu > Linux (Debian based). > > Damien > > _______________________________________________ > Staden mailing list > Staden@... > http://www.bio.net/biomail/listinfo/staden > _______________________________________________ Staden mailing list Staden@... http://www.bio.net/biomail/listinfo/staden
	Re: gap4 does not run by Damien-12 :: Rate this Message: Reply to Author \| View Threaded \| Show Only this Message Thank you very much. Now it works great. Damien Paul Donohue wrote: > http://www.bio.net/bionet/mm/staden/2006-January/001358.html > > On Wed, Apr 26, 2006 at 12:10:29AM +0000, Damien wrote: > >>I downloaded the Staden package and tried to use it. Unfortunately, the >>program gap4 refuses to start (while othe programs like trev of pregap4 >>run fine). >> >>When I try to start gap4, I get the following message: >> >>invalid command name "load_alignment_matrix" >> while executing >>"load_alignment_matrix [keylget gap_defs ALIGNMENT.MATRIX_FILE]" >> (file "/home/damien/BIN/staden-linux-1-6-0/lib/gap/gap.tcl" line 683) >> >>I would appreciate if someone could tell me what to do. My OS is Kubuntu >>Linux (Debian based). >> >>Damien >> >>_______________________________________________ >>Staden mailing list >>Staden@... >>http://www.bio.net/biomail/listinfo/staden >> > > _______________________________________________ Staden mailing list Staden@... http://www.bio.net/biomail/listinfo/staden