gbrowse_syn and gff2

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gbrowse_syn and gff2

by Wes Barris :: Rate this Message:

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Hi,

Are the two gbrowse databases that are aligned using gbrowse_syn
(rice and wild_rice in the gbrowse_syn example) required to be
.gff3 databases or will gff2 databases work?
--
Wes Barris <wes.barris@...>

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Re: gbrowse_syn and gff2

by Sheldon McKay-3 :: Rate this Message:

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Hi Wes,

GFF2 (Bio::DB::GFF) should work also.

Sheldon

On Tue, Oct 13, 2009 at 1:53 AM, Wes Barris <wes.barris@...> wrote:

> Hi,
>
> Are the two gbrowse databases that are aligned using gbrowse_syn
> (rice and wild_rice in the gbrowse_syn example) required to be
> .gff3 databases or will gff2 databases work?
> --
> Wes Barris <wes.barris@...>
>
> ------------------------------------------------------------------------------
> Come build with us! The BlackBerry(R) Developer Conference in SF, CA
> is the only developer event you need to attend this year. Jumpstart your
> developing skills, take BlackBerry mobile applications to market and stay
> ahead of the curve. Join us from November 9 - 12, 2009. Register now!
> http://p.sf.net/sfu/devconference
> _______________________________________________
> Gmod-gbrowse mailing list
> Gmod-gbrowse@...
> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>



--
Sheldon McKay, PhD
Cold Spring Harbor Laboratory
Office/Mobile:  516-367-6998 / 203-893-1682

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Come build with us! The BlackBerry(R) Developer Conference in SF, CA
is the only developer event you need to attend this year. Jumpstart your
developing skills, take BlackBerry mobile applications to market and stay
ahead of the curve. Join us from November 9 - 12, 2009. Register now!
http://p.sf.net/sfu/devconference
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