identifying accession number's database

[Chase Miller]

Hi all,

I have a list of accession numbers which could be from several
databases(e.g. NCBI, UniProt, Ensemble).  Does anyone know of a way I can
determine which database a particular accession number is from?

thanks,
Chase
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[Mark A. Jensen]

(sounds like a good project....Bio::DB::GuessDB...)
----- Original Message -----
From: "Chase Miller" <chmille4@...>
To: "BioPerl List" <Bioperl-l@...>
Sent: Saturday, October 24, 2009 9:03 AM
Subject: [Bioperl-l] identifying accession number's database

> Hi all,
>
> I have a list of accession numbers which could be from several
> databases(e.g. NCBI, UniProt, Ensemble).  Does anyone know of a way I can
> determine which database a particular accession number is from?
>
> thanks,
> Chase
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l@...
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>
>

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[Chase Miller]

Hans, thanks that was definitely helpful.  Looks like there isn't a perfect
solution, so I'll have to do a bit of guessing with my regexs.

(sounds like a good project....Bio::DB::GuessDB...)
>

Mark, I had a feeling my old google mentor wasn't going to let me off the
hook that easily once Hans said it was an open problem. :)  I'll dust off my
commit bit and see what I can do.

Cheers,
Chase

> ----- Original Message ----- From: "Chase Miller" <chmille4@...>
> To: "BioPerl List" <Bioperl-l@...>
> Sent: Saturday, October 24, 2009 9:03 AM
> Subject: [Bioperl-l] identifying accession number's database
>
>
>  Hi all,
>>
>> I have a list of accession numbers which could be from several
>> databases(e.g. NCBI, UniProt, Ensemble).  Does anyone know of a way I can
>> determine which database a particular accession number is from?
>>
>> thanks,
>> Chase
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l@...
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>
>>
>>

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[Hilmar Lapp]

I know that a former coworker of mine (Serge, copied) has written Perl  
code that guesses for quite a number of possible sources. I don't know  
whether any of it is available somewhere.

-hilmar

Sent from my iPod

On Oct 24, 2009, at 10:19 AM, "Mark A. Jensen" <maj@...>  
wrote:

> (sounds like a good project....Bio::DB::GuessDB...)
> ----- Original Message ----- From: "Chase Miller" <chmille4@...>
> To: "BioPerl List" <Bioperl-l@...>
> Sent: Saturday, October 24, 2009 9:03 AM
> Subject: [Bioperl-l] identifying accession number's database
>
>
>> Hi all,
>> I have a list of accession numbers which could be from several
>> databases(e.g. NCBI, UniProt, Ensemble).  Does anyone know of a way  
>> I can
>> determine which database a particular accession number is from?
>> thanks,
>> Chase
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l@...
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l@...
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>

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