miRNA target

[Raghu-21]

Dear all. I have a list of miRNAs in Oryza sativa and I am looking for
their target mRNAs. I am not able to get any software that will search
the targets in O.sativa. Please help me if anyone knows it. Thank
you... Raghu Ram B

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[Shameer Khadar-2]

---------- Forwarded message ----------
From: Shameer Khadar <skhadar@...>
Date: Mon, Aug 17, 2009 at 10:19 AM
Subject: Re: [Computational-biology] miRNA target
To: Raghu <hiraghuraman@...>


Hello Raghu,

I have used this resource dedicated to drosophila to get off-target
information for fly genes in a large scale rnai screening. You may try
http://flyrnai.org/RNAi_find_frag_free.html.

You may try this resource http://dscheck.rnai.jp/  for Oryza genes/

You may find this paper useful :
http://nar.oxfordjournals.org/cgi/content/full/33/suppl_2/W589

Trust this helps.
Khader shameer
NCBS - TIFR

On Mon, Aug 17, 2009 at 2:37 AM, Raghu <hiraghuraman@...> wrote:

> Dear all. I have a list of miRNAs in Oryza sativa and I am looking for
> their target mRNAs. I am not able to get any software that will search
> the targets in O.sativa. Please help me if anyone knows it. Thank
> you... Raghu Ram B
>
> _______________________________________________
> Comp-bio mailing list
> Comp-bio@...
> http://www.bio.net/biomail/listinfo/comp-bio
>

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