Ok, I deleted all NB installations.
Then I installed RC2 only and tried JRuby 1.2.0 (internal) worked with locally installed rails gems under NB JRuby dir.
Then I switched to my JRuby 1.3.1 installation and suddenly the rake gem didn't show up any more. I suppose it is because the rake gem was installed in the gem dir under the 1.3.1 installation and not in the GEM_HOME dir.
I installed rake which went into the GEM_HOME this time and now everything works fine.
Hope this description can help you figure out where the problem lies.
D.
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